Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016052.1 Corchorus olitorius cultivar O-4 contig16085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23414

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
776--813
2
19.0
2
84
10
51
47
0
5
47
1.24
775--814
16
2.6
16
84
11
57
45
0
7
47
1.31
944--1031
16
5.5
16
70
22
60
53
28
7
10
1.63
970--1035
16
4.1
16
74
14
64
53
28
10
7
1.63
1084--1116
17
2.0
17
88
5
50
54
0
0
45
0.99
6839--6879
2
20.5
2
94
0
73
51
48
0
0
1.00
8671--8739
32
2.2
32
83
0
84
37
34
10
17
1.83
11898--11990
37
2.5
40
77
13
115
38
2
1
58
1.17
19289--19314
7
3.7
7
100
0
52
0
11
0
88
0.52
19503--19863
180
2.0
180
92
1
600
50
3
10
35
1.53
20290--20354
31
2.1
31
91
2
105
32
15
13
38
1.87
20465--20522
28
2.1
28
86
0
80
43
13
15
27
1.85

Tables:   1

The End!