Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016053.1 Corchorus olitorius cultivar O-4 contig16086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14398

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
781--916
68
2.0
69
85
4
186
25
14
12
47
1.79
1133--1168
18
2.0
18
100
0
72
33
22
16
27
1.95
1980--2053
36
2.1
36
100
0
148
51
5
14
28
1.65
1980--2031
18
2.9
18
71
21
54
51
7
11
28
1.65
1992--2058
18
3.7
18
73
15
66
52
2
14
29
1.57
2869--2898
14
2.1
14
93
0
51
63
0
30
6
1.20
8567--8597
10
3.0
10
90
9
53
90
0
0
9
0.46
8568--8597
11
2.7
11
100
0
60
93
0
0
6
0.35
10543--10721
92
2.0
92
85
2
245
51
17
13
17
1.76
12162--12197
14
2.8
13
88
12
56
30
0
0
69
0.89
13554--13603
25
2.0
26
88
4
75
24
10
16
50
1.75
14311--14397
45
1.9
45
97
0
165
25
4
26
43
1.74

Tables:   1

The End!