Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016054.1 Corchorus olitorius cultivar O-4 contig16087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65140
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:1756 original size:15 final size:16
Alignment explanation
Indices: 1736--1772 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
1726 CTCTGCTTTT
1736 TCCTTTCTCTT-TTGC
1 TCCTTTCTCTTCTTGC
1751 TCCTTT-TCTTCTTGC
1 TCCTTTCTCTTCTTGC
1766 T-CTTTCT
1 TCCTTTCT
1773 TCAATCTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.00, C:0.32, G:0.05, T:0.62
Consensus pattern (16 bp):
TCCTTTCTCTTCTTGC
Found at i:10068 original size:3 final size:3
Alignment explanation
Indices: 10060--10090 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10050 AGAGAGAGAG
10060 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC A
1 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC A
10091 AGTACAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.32, G:0.32, T:0.00
Consensus pattern (3 bp):
AGC
Found at i:10706 original size:44 final size:44
Alignment explanation
Indices: 10658--10985 Score: 351
Period size: 44 Copynumber: 7.3 Consensus size: 44
10648 CCACACTAAA
* * * *
10658 AAATTTTGATAACCACAC-AATGAAATTTTAATAACCTTCTTATG
1 AAATTTTGATAACCTC-CTCATGAAATTATAATAACCATCTTATG
* * **
10702 AAATTTTGTTTAAAAACCTGATCCT-ATGAAATTTTGGTAACCATAC-TATG
1 AAATTTTG----ATAACC---TCCTCATGAAATTATAATAACCAT-CTTATG
* * ** *
10752 AAATTTTGATAACTTCCAT-ATGAAATTTTGGTAACCA-CACTATG
1 AAATTTTGATAACCTCC-TCATGAAATTATAATAACCATC-TTATG
*
10796 GAATTTTGATAACCTCCTCATGAAATTATAATAACCATCTTATG
1 AAATTTTGATAACCTCCTCATGAAATTATAATAACCATCTTATG
* *
10840 GAATTTTGATGACCTCCTCATGAAATTATAATAACCATCTTATG
1 AAATTTTGATAACCTCCTCATGAAATTATAATAACCATCTTATG
* * *
10884 GAATTTTGATGACCTCCTCATGAAATTATAATAACCATCTTATA
1 AAATTTTGATAACCTCCTCATGAAATTATAATAACCATCTTATG
10928 AAATTTTGATAACCTCCTCATGAAATTATAATAACCATCTTATG
1 AAATTTTGATAACCTCCTCATGAAATTATAATAACCATCTTATG
10972 AAATTTTGATAACC
1 AAATTTTGATAACC
10986 ACACAGAGAC
Statistics
Matches: 252, Mismatches: 18, Indels: 28
0.85 0.06 0.09
Matches are distributed among these distances:
42 1 0.00
43 4 0.02
44 206 0.82
45 1 0.00
46 4 0.02
48 5 0.02
50 29 0.12
51 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (44 bp):
AAATTTTGATAACCTCCTCATGAAATTATAATAACCATCTTATG
Found at i:10720 original size:26 final size:27
Alignment explanation
Indices: 10684--10737 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
10674 ACAATGAAAT
* *
10684 TTTAATAACCT-TCTTATGAAATTTTG
1 TTTAAAAACCTATCCTATGAAATTTTG
10710 TTTAAAAACCTGATCCTATGAAATTTTG
1 TTTAAAAACCT-ATCCTATGAAATTTTG
10738 GTAACCATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.42
28 14 0.58
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (27 bp):
TTTAAAAACCTATCCTATGAAATTTTG
Found at i:10986 original size:22 final size:22
Alignment explanation
Indices: 10343--10986 Score: 274
Period size: 22 Copynumber: 28.9 Consensus size: 22
10333 GAAATACCAC
* * *
10343 TATGAAATTTTGGTAATCATAT
1 TATGAAATTTTGATAACCATCT
* * *
10365 TTTGAAAATTTGATAACC-TTT
1 TATGAAATTTTGATAACCATCT
*
10386 TAAGAAATTTTGATAACC-TCT
1 TATGAAATTTTGATAACCATCT
* * * *
10407 CTATAAAATTTTGTTGACC-CCT
1 -TATGAAATTTTGATAACCATCT
* *
10429 CTATCAAATTTTGATAATCA-CAT
1 -TATGAAATTTTGATAACCATC-T
10452 TAT-ATAATTTTGATAATCTCA-CT
1 TATGA-AATTTTGATAA-C-CATCT
10475 T-TGAAATTTTGATAACAACA-C-
1 TATGAAATTTTGATAAC--CATCT
* * *
10496 TATGAAATTTTGATAATCTTCC
1 TATGAAATTTTGATAACCATCT
10518 TAT-AAATTTTGATAATCCAATCT
1 TATGAAATTTTGATAA-CC-ATCT
* *
10541 CTATGAAATTTCGATAATCA-CT
1 -TATGAAATTTTGATAACCATCT
* *
10563 CTATGAGA-TTTGATAACCTTC-
1 -TATGAAATTTTGATAACCATCT
* * * **
10584 TATCAACTTTTGGTATTC--CT
1 TATGAAATTTTGATAACCATCT
* * *
10604 TATGAAATTGAGACTTTTATAACCTTCA
1 TATGAAA-T-----TTTGATAACCATCT
* *
10632 TATTAAATTTTGATAACCA-CAC
1 TATGAAATTTTGATAACCATC-T
** *
10654 TAAAAAATTTTGATAACCA-CAC
1 TATGAAATTTTGATAACCATC-T
* * *
10676 AATGAAATTTTAATAACCTTCT
1 TATGAAATTTTGATAACCATCT
* *
10698 TATGAAATTTTGTTTAAAAACCTGATCC
1 TATGAAATTTTG----ATAACC--ATCT
*
10726 TATGAAATTTTGGTAACCATAC-
1 TATGAAATTTTGATAACCAT-CT
* *
10748 TATGAAATTTTGATAA-CTTCCA
1 TATGAAATTTTGATAACCAT-CT
* *
10770 TATGAAATTTTGGTAACCA-CAC
1 TATGAAATTTTGATAACCATC-T
*
10792 TATGGAATTTTGATAACC-TCCT
1 TATGAAATTTTGATAACCAT-CT
* * *
10814 CATGAAATTATAATAACCATCT
1 TATGAAATTTTGATAACCATCT
* *
10836 TATGGAATTTTGATGACC-TCCT
1 TATGAAATTTTGATAACCAT-CT
* * *
10858 CATGAAATTATAATAACCATCT
1 TATGAAATTTTGATAACCATCT
* *
10880 TATGGAATTTTGATGACC-TCCT
1 TATGAAATTTTGATAACCAT-CT
* * *
10902 CATGAAATTATAATAACCATCT
1 TATGAAATTTTGATAACCATCT
*
10924 TATAAAATTTTGATAACC-TCCT
1 TATGAAATTTTGATAACCAT-CT
* * *
10946 CATGAAATTATAATAACCATCT
1 TATGAAATTTTGATAACCATCT
10968 TATGAAATTTTGATAACCA
1 TATGAAATTTTGATAACCA
10987 CACAGAGACA
Statistics
Matches: 468, Mismatches: 107, Indels: 94
0.70 0.16 0.14
Matches are distributed among these distances:
19 1 0.00
20 10 0.02
21 59 0.13
22 328 0.70
23 15 0.03
24 11 0.02
25 11 0.02
26 11 0.02
27 1 0.00
28 21 0.04
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (22 bp):
TATGAAATTTTGATAACCATCT
Found at i:11492 original size:166 final size:168
Alignment explanation
Indices: 11203--11536 Score: 495
Period size: 167 Copynumber: 2.0 Consensus size: 168
11193 AATAGTAAAG
11203 GAAATTTGCATGTTCATCAACGAAAATCAATTTTTGACAAACTTATAATTCGGTCTAAATTGAAA
1 GAAATTTGCATGTTCATCAACGAAAATCAATTTTTGACAAACTTATAATTCGGTCTAAATTGAAA
*
11268 TTTTTAAATAATAAAATTATACTAAATTTTAATAAAGGTAATTTAGAAATATATTTG-AAAAAAG
66 TTTTTAAATAATAAAATTATACTAAATTTTAATAAAGGTAATTTAGAAATATATTTGAAAAAAAA
* *
11332 GGTACAATCGGAAAATATAAAG-TTTCTCATTATTCGTA
131 GGTACAATCGAAAAACATAAAGTTTTC-CATTATTCGTA
*
11370 GAAATTTGCATGTTCATCAATGAAAATCAA-TTTT-ACAAACTTATAATTCGGTCTAAATTGAAA
1 GAAATTTGCATGTTCATCAACGAAAATCAATTTTTGACAAACTTATAATTCGGTCTAAATTGAAA
* * *
11433 TTTTATAATTAATTTTTAAA-TA-A-TAAATTTTAAT-AATGTCAATTTAGAAATATATTTGAAA
66 TTTT-TAAATAA---TAAAATTATACTAAATTTTAATAAAGGT-AATTTAGAAATATATTTGAAA
11494 AAAAAGGTACAATCGAAAAACATAAAGTTTTCCATTATTCGTA
126 AAAAAGGTACAATCGAAAAACATAAAGTTTTCCATTATTCGTA
11537 CTTTTATATA
Statistics
Matches: 153, Mismatches: 7, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
165 37 0.24
166 39 0.25
167 67 0.44
168 6 0.04
169 4 0.03
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.37
Consensus pattern (168 bp):
GAAATTTGCATGTTCATCAACGAAAATCAATTTTTGACAAACTTATAATTCGGTCTAAATTGAAA
TTTTTAAATAATAAAATTATACTAAATTTTAATAAAGGTAATTTAGAAATATATTTGAAAAAAAA
GGTACAATCGAAAAACATAAAGTTTTCCATTATTCGTA
Found at i:16243 original size:12 final size:12
Alignment explanation
Indices: 16217--16267 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
16207 TATATACCTG
* *
16217 TCGAGCTCTAGC
1 TCGAGCTCGAAC
16229 TCGAGCTCGAAC
1 TCGAGCTCGAAC
* *
16241 TCG-GTATCGAAT
1 TCGAG-CTCGAAC
16253 TCGAGCTCGAAC
1 TCGAGCTCGAAC
16265 TCG
1 TCG
16268 GTATCTTTAG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 1 0.03
12 29 0.94
13 1 0.03
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (12 bp):
TCGAGCTCGAAC
Found at i:18925 original size:265 final size:266
Alignment explanation
Indices: 18417--18949 Score: 840
Period size: 265 Copynumber: 2.0 Consensus size: 266
18407 AGAATTTAGC
*
18417 TTCATTGTTCTAGTTTGAACATACTTAGGATTTCATCAATCTTGTAGAGTCTTAGCAAACAATTA
1 TTCATTGTTCTAGTTTGAACATACTTAGGATTTCATCAATCTTGTAGAGTCCTAGCAAACAATTA
* * *
18482 GGTAGTGATTACTTAATTGTTTGTAAATCTTGTGATCTTAGGTTGTTAATTGTAGTTCTAATTAA
66 GGCAGTGATTACTTAATTG-TTGT-AATCTTGTGATCTTAGGTTGTTAATTGCAGGTCTAATTAA
* * *
18547 ATCATCTAAGACCGACGAACGAAGAAGAGAGCTTTGTTGAAGACTATCGATTTCATCAAGTCTAG
129 ATCATCTAAGACCGACGAACGAAGAAGAGAGCTTGGTT-AAGACAATCAATTTCATCAAGTCTAG
*
18612 AGTTGGAGTTTCAAGTTTGATCTTTGGAGGAATTCAAGGGTAGATTTGAATCTATCACAACTAGA
193 AGTTGGAGTTTCAAATTTGATCTTTGGAGGAATTCAAGGGTAGATTTGAATCTATCACAACTAGA
18677 TTCGTATCA
258 TTCGTATCA
*
18686 TTCATTGTTCTAGTTTGAACATACTTAGGATTTCTTCAATCTTGTAGAGTCCTAGCAAACAATTA
1 TTCATTGTTCTAGTTTGAACATACTTAGGATTTCATCAATCTTGTAGAGTCCTAGCAAACAATTA
* * *
18751 GGCAGTGATTGCTTGATTG-TGT-TTCTTGTGATCTTAGGTTGTTAATTGCAGGTCTAATT-AAT
66 GGCAGTGATTACTTAATTGTTGTAATCTTGTGATCTTAGGTTGTTAATTGCAGGTCTAATTAAAT
* *
18813 CATCTATGGCCGACGAACGAAGAAGAGAGCTTGGTT-AGATTCAATCAATTTCATCAAGTCTAGA
131 CATCTAAGACCGACGAACGAAGAAGAGAGCTTGGTTAAGA--CAATCAATTTCATCAAGTCTAG-
* *
18877 AGTTGGTGTTTCAAATTTGATCTTTGGAGGAATTCAAGGGTGGATTTGAATCTATCACAACTAGA
193 AGTTGGAGTTTCAAATTTGATCTTTGGAGGAATTCAAGGGTAGATTTGAATCTATCACAACTAGA
18942 TTCGTATC
258 TTCGTATC
18950 CCTATGTTAT
Statistics
Matches: 245, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
262 3 0.01
264 56 0.23
265 104 0.42
267 3 0.01
269 79 0.32
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (266 bp):
TTCATTGTTCTAGTTTGAACATACTTAGGATTTCATCAATCTTGTAGAGTCCTAGCAAACAATTA
GGCAGTGATTACTTAATTGTTGTAATCTTGTGATCTTAGGTTGTTAATTGCAGGTCTAATTAAAT
CATCTAAGACCGACGAACGAAGAAGAGAGCTTGGTTAAGACAATCAATTTCATCAAGTCTAGAGT
TGGAGTTTCAAATTTGATCTTTGGAGGAATTCAAGGGTAGATTTGAATCTATCACAACTAGATTC
GTATCA
Found at i:22515 original size:67 final size:67
Alignment explanation
Indices: 22402--22543 Score: 239
Period size: 67 Copynumber: 2.1 Consensus size: 67
22392 TCACAGAATG
*
22402 TGAGTTTGTTTGTAATTTGTTTGTTTATTTGGTAGGTAGGTAGTTTATTTATGGTATAGTTTCTA
1 TGAG-TTGTTTGTAATTTGTTTGTATATTTGGTAGGTAGGTAGTTTATTTATGGTATAGTTTCTA
*
22467 GTT
65 ATT
*
22470 TGAGTTGTTTGTAATTTGTTTGTATATTTTGTAGGTAGGTAGTTTATTTATGGTATAGTTTCTAA
1 TGAGTTGTTTGTAATTTGTTTGTATATTTGGTAGGTAGGTAGTTTATTTATGGTATAGTTTCTAA
22535 TT
66 TT
*
22537 TGGGTTG
1 TGAGTTG
22544 AATTCTCATT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
67 66 0.94
68 4 0.06
ACGTcount: A:0.18, C:0.01, G:0.25, T:0.55
Consensus pattern (67 bp):
TGAGTTGTTTGTAATTTGTTTGTATATTTGGTAGGTAGGTAGTTTATTTATGGTATAGTTTCTAA
TT
Found at i:22917 original size:19 final size:19
Alignment explanation
Indices: 22893--22932 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
22883 CACCTCTGGT
22893 TATTAGAATTGTATTGTTA
1 TATTAGAATTGTATTGTTA
22912 TATTAGAATTGTATTGTTA
1 TATTAGAATTGTATTGTTA
22931 TA
1 TA
22933 AAACTCTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.53
Consensus pattern (19 bp):
TATTAGAATTGTATTGTTA
Found at i:35652 original size:38 final size:38
Alignment explanation
Indices: 35556--35741 Score: 293
Period size: 38 Copynumber: 4.9 Consensus size: 38
35546 GGCTGTGCAT
* *
35556 AGTGGACCCGTACCTCAGGGGGTTAAACTGATGGTAAAG
1 AGTGGACCCGTGCCTCAGGGGGTTAAACTGTTGGT-AAG
* * * *
35595 AGTGGATCCATACCACAGGGGGTTAAACTGTTGGTAAG
1 AGTGGACCCGTGCCTCAGGGGGTTAAACTGTTGGTAAG
35633 AGTGGACCCGTGCCTCAGGGGGTTAAACTGTTGGTAAG
1 AGTGGACCCGTGCCTCAGGGGGTTAAACTGTTGGTAAG
35671 AGTGGACCCGTGCCTCAGGGGGTTAAACTGTTGGTAAG
1 AGTGGACCCGTGCCTCAGGGGGTTAAACTGTTGGTAAG
*
35709 AGTGGACTCGTGCCTCAGGGGGTT-AACTGTTGG
1 AGTGGACCCGTGCCTCAGGGGGTTAAACTGTTGG
35742 CTAGACTCGA
Statistics
Matches: 138, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
37 9 0.07
38 98 0.71
39 31 0.22
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.24
Consensus pattern (38 bp):
AGTGGACCCGTGCCTCAGGGGGTTAAACTGTTGGTAAG
Found at i:35781 original size:6 final size:6
Alignment explanation
Indices: 35771--35838 Score: 109
Period size: 6 Copynumber: 11.3 Consensus size: 6
35761 CGTTAACGGA
* * *
35771 TGATTA TGATTA TGATTG AGATTG TGATTG TGATTG TGATTG TGATTG
1 TGATTG TGATTG TGATTG TGATTG TGATTG TGATTG TGATTG TGATTG
35819 TGATTG TGATTG TGATTG TG
1 TGATTG TGATTG TGATTG TG
35839 GTGCAGCCTG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.49
Consensus pattern (6 bp):
TGATTG
Found at i:39837 original size:13 final size:13
Alignment explanation
Indices: 39819--39858 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
39809 CGGTAGCAAC
*
39819 AAAAAAAT-TAGA
1 AAAAAAATACAGA
39831 AAAAAAATACAGA
1 AAAAAAATACAGA
*
39844 AAAAAAATCCAGA
1 AAAAAAATACAGA
39857 AA
1 AA
39859 GAAGGAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 8 0.32
13 17 0.68
ACGTcount: A:0.75, C:0.07, G:0.07, T:0.10
Consensus pattern (13 bp):
AAAAAAATACAGA
Found at i:45791 original size:35 final size:35
Alignment explanation
Indices: 45740--45810 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
45730 AAACTCATTT
45740 GCATTGGAGAGACGATTGAGGATGCCATCCAAAGC
1 GCATTGGAGAGACGATTGAGGATGCCATCCAAAGC
*
45775 GCATTGGAGAGGCGATTGAGGATGCCATCCAAAGC
1 GCATTGGAGAGACGATTGAGGATGCCATCCAAAGC
45810 G
1 G
45811 GAAAGATTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.30, C:0.20, G:0.34, T:0.17
Consensus pattern (35 bp):
GCATTGGAGAGACGATTGAGGATGCCATCCAAAGC
Found at i:60281 original size:152 final size:152
Alignment explanation
Indices: 60005--60312 Score: 591
Period size: 152 Copynumber: 2.0 Consensus size: 152
59995 AGACAAATAG
60005 ATCCACTAGCATTTTTGTGATGTTTCTATTTTATAGAGTGTCAAGTATTTACCTGTCCTAACTCC
1 ATCCACTAGCATTTTTGTGATGTTTCTATTTTATAGAGTGTCAAGTATTTACCTGTCCTAACTCC
*
60070 ACTTCTAGGAACAACTTCAACTCTGCATCATTTGCCGTATTTGAAACCTCTCTTAGTTGTCCTAC
66 ACTTCTAGGAACAACTTCAACTCTGCATCATTTACCGTATTTGAAACCTCTCTTAGTTGTCCTAC
60135 CTATATAAAAAAGGAAGTTTAT
131 CTATATAAAAAAGGAAGTTTAT
*
60157 ATCCACTAGCATTTTTGTGATGTTTCTATTTTATAGAGTGTCAAGTATTTACCTGTCCTAGCTCC
1 ATCCACTAGCATTTTTGTGATGTTTCTATTTTATAGAGTGTCAAGTATTTACCTGTCCTAACTCC
60222 ACTTCTAGGAACAACTTCAACTCTGCATCATTTACCGTATTTGAAACCTCTCTTAGTTGTCCTAC
66 ACTTCTAGGAACAACTTCAACTCTGCATCATTTACCGTATTTGAAACCTCTCTTAGTTGTCCTAC
60287 CTATATAAAAAAGGAAGTTTAT
131 CTATATAAAAAAGGAAGTTTAT
60309 -TCCA
1 ATCCA
60313 AGATCAGAAT
Statistics
Matches: 154, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
151 4 0.03
152 150 0.97
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (152 bp):
ATCCACTAGCATTTTTGTGATGTTTCTATTTTATAGAGTGTCAAGTATTTACCTGTCCTAACTCC
ACTTCTAGGAACAACTTCAACTCTGCATCATTTACCGTATTTGAAACCTCTCTTAGTTGTCCTAC
CTATATAAAAAAGGAAGTTTAT
Found at i:65083 original size:22 final size:22
Alignment explanation
Indices: 65044--65092 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
65034 AATATGGCCG
** *
65044 GTCGCGAACGGCTTGTGGTCAA
1 GTCGCGAACGGCCCGTGGGCAA
* *
65066 GTCGCGACCGGCCCGTGGGCTA
1 GTCGCGAACGGCCCGTGGGCAA
65088 GTCGC
1 GTCGC
65093 AAGTGTCACG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.12, C:0.31, G:0.39, T:0.18
Consensus pattern (22 bp):
GTCGCGAACGGCCCGTGGGCAA
Done.