Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016055.1 Corchorus olitorius cultivar O-4 contig16088, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28880

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3397--3443
26
1.9
24
87
12
69
40
4
27
27
1.75
4347--4430
42
2.0
42
100
0
168
23
30
19
26
1.98
7126--7211
45
1.9
45
97
0
163
62
0
25
11
1.29
11680--11728
21
2.3
22
89
10
75
57
4
0
38
1.18
11794--11862
3
23.0
3
77
5
68
60
5
0
33
1.20
11797--11862
18
3.8
18
81
15
86
60
6
0
33
1.21
11784--11874
27
3.3
26
73
13
85
58
7
0
34
1.27
11975--12040
27
2.4
27
89
0
105
12
40
31
15
1.83
12591--12615
11
2.3
11
100
0
50
40
24
0
36
1.55
14042--14071
2
15.0
2
100
0
60
50
0
0
50
1.00
14138--14178
13
3.4
13
74
19
52
34
26
9
29
1.88
14137--14183
23
2.0
23
95
0
85
42
23
8
25
1.82
16862--16888
2
13.5
2
100
0
54
48
0
0
51
1.00
18618--18813
100
2.0
100
96
0
365
31
17
14
36
1.91
20429--20454
2
13.0
2
100
0
52
50
0
50
0
1.00
20938--20981
6
7.3
6
100
0
88
50
34
0
15
1.45

Tables:   1

The End!