Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016058.1 Corchorus olitorius cultivar O-4 contig16091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68269
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Found at i:11985 original size:167 final size:168
Alignment explanation
Indices: 11664--12005 Score: 483
Period size: 167 Copynumber: 2.0 Consensus size: 168
11654 CAAAATCGAT
* *
11664 TAAAAAATAACATAAAATGAAAACAACAATATGAGAAACATGGAACGGAACCATCAATGAAATAA
1 TAAAAAATAACACAAAATGAAAACAACAATATGAGAAACATGGAACGGAACCATCAATG--AGAA
* *
11729 AAAAAAAATCAAACAAAAAGGAAACATAACATACCTTTTTGGAACCTGAAAAAGCTCCAAGTACC
64 AAAAAAAACCAAACAAAAAGGAAACATAACATACCTTTTTGGAACCAGAAAAAGCTCCAAGTACC
* **
11794 CAACAAATGAAATCGGTTTCACAAATCATGAGCACCTGAA
129 CAAAAAATGAAATCGACTTCACAAATCATGAGCACCTGAA
* * *
11834 TAAAAAATAATACAAAATGAAAACAACAATATGAGAAACATGGAACGGAACCATCACTG-GGAAA
1 TAAAAAATAACACAAAATGAAAACAACAATATGAGAAACATGGAACGGAACCATCAATGAGAAAA
* * * * *
11898 AAAAACCCAAACATAAAGGAAACTTAGCATACC-TTTTGCGAACCAGAAAAAGCTTCAA-TCACC
66 AAAAAACCAAACAAAAAGGAAACATAACATACCTTTTTG-GAACCAGAAAAAGCTCCAAGT-ACC
*
11961 CAAAAAATGAAATTGACTTCACAAATCATGAGCACCTGAA
129 CAAAAAATGAAATCGACTTCACAAATCATGAGCACCTGAA
12001 TAAAA
1 TAAAA
12006 CCCAAAATAT
Statistics
Matches: 154, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
166 6 0.04
167 92 0.60
170 56 0.36
ACGTcount: A:0.52, C:0.18, G:0.13, T:0.17
Consensus pattern (168 bp):
TAAAAAATAACACAAAATGAAAACAACAATATGAGAAACATGGAACGGAACCATCAATGAGAAAA
AAAAAACCAAACAAAAAGGAAACATAACATACCTTTTTGGAACCAGAAAAAGCTCCAAGTACCCA
AAAAATGAAATCGACTTCACAAATCATGAGCACCTGAA
Found at i:13814 original size:18 final size:18
Alignment explanation
Indices: 13779--13816 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
13769 TCTTGGATGT
* *
13779 TTGAGTCAGTTTAGTTTG
1 TTGAGTCAGTTCAATTTG
13797 TTGAGTCAGTTCAATTTG
1 TTGAGTCAGTTCAATTTG
13815 TT
1 TT
13817 TTGAATTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.08, G:0.24, T:0.50
Consensus pattern (18 bp):
TTGAGTCAGTTCAATTTG
Found at i:17243 original size:18 final size:19
Alignment explanation
Indices: 17222--17262 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
17212 CCTCTTTTGA
17222 TTTTCTG-ATTTT-TCACTT
1 TTTTCTGAATTTTGTC-CTT
17240 TTTT-TGAATTTTGTCCTT
1 TTTTCTGAATTTTGTCCTT
17258 TTTTC
1 TTTTC
17263 ATCTCTAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
17 2 0.10
18 16 0.80
19 2 0.10
ACGTcount: A:0.10, C:0.15, G:0.07, T:0.68
Consensus pattern (19 bp):
TTTTCTGAATTTTGTCCTT
Found at i:21402 original size:20 final size:20
Alignment explanation
Indices: 21379--21418 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
21369 AAAAAAAAAA
21379 AATTTTGAT-TTTCCGTTTTT
1 AATTTTG-TGTTTCCGTTTTT
*
21399 AATTTTGTGTTTGCGTTTTT
1 AATTTTGTGTTTCCGTTTTT
21419 GAAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.12, C:0.07, G:0.15, T:0.65
Consensus pattern (20 bp):
AATTTTGTGTTTCCGTTTTT
Found at i:21465 original size:20 final size:20
Alignment explanation
Indices: 21440--21477 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21430 GGGTTTTCGG
21440 TTTTGCGAT-AAAAAAAAAGT
1 TTTTGCG-TCAAAAAAAAAGT
21460 TTTTGCGTCAAAAAAAAA
1 TTTTGCGTCAAAAAAAAA
21478 TTATTGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (20 bp):
TTTTGCGTCAAAAAAAAAGT
Found at i:21658 original size:20 final size:21
Alignment explanation
Indices: 21626--21672 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
21616 ATTGGTATCA
*
21626 AGGTCA-TCTAGGGGCATTTT
1 AGGTCATTCTAGGGGCATTCT
*
21646 AGGTCATTC-AGGGGTATTCT
1 AGGTCATTCTAGGGGCATTCT
21666 A-GTCATT
1 AGGTCATT
21673 TGTACGTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.25
20 16 0.67
21 2 0.08
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (21 bp):
AGGTCATTCTAGGGGCATTCT
Found at i:28874 original size:21 final size:21
Alignment explanation
Indices: 28813--28880 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
28803 CCACTAGAAG
* *
28813 GCCACAACCGGCCATCCACCGT
1 GCCACCACCGGCCATGC-CCGT
* ** *
28835 GCCACCACCAGTTAAGCCCGT
1 GCCACCACCGGCCATGCCCGT
28856 GCCACCACCGGCCATGCCCGT
1 GCCACCACCGGCCATGCCCGT
28877 GCCA
1 GCCA
28881 TCATCATTCC
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
21 25 0.69
22 11 0.31
ACGTcount: A:0.21, C:0.49, G:0.21, T:0.10
Consensus pattern (21 bp):
GCCACCACCGGCCATGCCCGT
Found at i:32139 original size:15 final size:15
Alignment explanation
Indices: 32121--32149 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32111 GTTTCTAGTA
32121 TAATTGTTTTCTTTT
1 TAATTGTTTTCTTTT
32136 TAATTGTTTTCTTT
1 TAATTGTTTTCTTT
32150 CAACCTCTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TAATTGTTTTCTTTT
Found at i:34397 original size:69 final size:69
Alignment explanation
Indices: 34285--34596 Score: 502
Period size: 69 Copynumber: 4.5 Consensus size: 69
34275 GGTAATGCAC
* * * * *
34285 CGTATGGAAACGAATGTGGCTTGTGGAAAAGCCCATGTGGCTTGGATGGAACCAAGGCTTAAACT
1 CGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTTGAACT
34350 GAC-
66 GACT
34353 CTGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTTGAAC
1 C-GTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTTGAAC
34418 TGACT
65 TGACT
34423 CGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTTGAACT
1 CGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTTGAACT
34488 GACT
66 GACT
* * *
34492 CGTATGGAAACGAGTTTAGCTTGTGGAAAAGCCCATGCT-GCTTGGATGGAACCAAGGCTTGAAC
1 CGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTAT-ATGGCTTGGATGGAACCAAGGCTTGAAC
34556 TGACT
65 TGACT
* *
34561 CGTATGAAAACGAGTTTGGCTTGCGGAAAAGCCTAT
1 CGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTAT
34597 GTATTCGGAT
Statistics
Matches: 229, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
68 1 0.00
69 226 0.99
70 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (69 bp):
CGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCTTGGATGGAACCAAGGCTTGAACT
GACT
Found at i:41234 original size:21 final size:21
Alignment explanation
Indices: 41171--41243 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
41161 CCACTACCAA
* * *
41171 GCCACAACCGACCATTCACCGT
1 GCCACCACCGGCCATGC-CCGT
** * *
41193 GCCACCACCGGTTAAGACCGT
1 GCCACCACCGGCCATGCCCGT
41214 GCCACCACCGGCCATGCCCGT
1 GCCACCACCGGCCATGCCCGT
*
41235 GCCATCACC
1 GCCACCACC
41244 ATTCCAAGTT
Statistics
Matches: 39, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
21 29 0.74
22 10 0.26
ACGTcount: A:0.22, C:0.47, G:0.19, T:0.12
Consensus pattern (21 bp):
GCCACCACCGGCCATGCCCGT
Found at i:50385 original size:16 final size:16
Alignment explanation
Indices: 50360--50392 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50350 GAGAAAATGA
*
50360 TTTGAGAAAAACCTTT
1 TTTGAAAAAAACCTTT
50376 TTTGAAAAAAACCTTT
1 TTTGAAAAAAACCTTT
50392 T
1 T
50393 ATTACCTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTTGAAAAAAACCTTT
Found at i:50428 original size:18 final size:19
Alignment explanation
Indices: 50407--50448 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
50397 CCTCTTTTGA
50407 TTTTCTG-ATTTT-TCACTT
1 TTTTCTGAATTTTGTC-CTT
*
50425 TTTTTTGAATTTTGTCCTT
1 TTTTCTGAATTTTGTCCTT
50444 TTTTC
1 TTTTC
50449 ATCTCTACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 6 0.30
19 12 0.60
20 2 0.10
ACGTcount: A:0.10, C:0.14, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTTCTGAATTTTGTCCTT
Found at i:52832 original size:129 final size:130
Alignment explanation
Indices: 52539--52943 Score: 659
Period size: 129 Copynumber: 3.1 Consensus size: 130
52529 GGAAACTTAC
** * * *
52539 TTAGGCAACGTTTTTATAAAGTTGTTACGAATAGTTTATGATTTCGCAACGACTTTGTTTTTGTT
1 TTAGGCAACGACTTTATAAAATTGTTACGAATAGATTGTGATTTCGCAACGACTTTGTTTTTGTT
*
52604 GTTACGAAAATTGTAAGCATTGGCAACGACTAAAAAAGTGTTGTGTAAAATACTATCAAAATCAT
66 GTTACGAAAATTGTAAGCATTGGCAACGACTAAAAAAGTGTTGTGTAAAATACCATCAAAATCAT
*
52669 TTAGGCAACGACTTTATAAAATTGTTACGAATAGATTGTGATTTCGCAACGACTTTATTTTTGTT
1 TTAGGCAACGACTTTATAAAATTGTTACGAATAGATTGTGATTTCGCAACGACTTTGTTTTTGTT
52734 GTTACGAAAATTGTAAGCATTGGCAACGACT-AAAAAGTGTTGTGTAAAATACCATCAAAATCAT
66 GTTACGAAAATTGTAAGCATTGGCAACGACTAAAAAAGTGTTGTGTAAAATACCATCAAAATCAT
52798 TTAGGCAACGACTTTATAAAATTGTTACGAATAGATTGTGATTTCGCAACGACTTTGTTTTTGTT
1 TTAGGCAACGACTTTATAAAATTGTTACGAATAGATTGTGATTTCGCAACGACTTTGTTTTTGTT
* * * * *
52863 GTTACGAAAACTGTAAGCATTGGCAACAATTAAAAAATTCGTTGGGTAAAATACCATCAAAATCA
66 GTTACGAAAATTGTAAGCATTGGCAACGACTAAAAAAGT-GTTGTGTAAAATACCATCAAAATCA
*
52928 C
130 T
* *
52929 TAAGACAACGACTTT
1 TTAGGCAACGACTTT
52944 CAATTATTGT
Statistics
Matches: 257, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
129 124 0.48
130 96 0.37
131 37 0.14
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.34
Consensus pattern (130 bp):
TTAGGCAACGACTTTATAAAATTGTTACGAATAGATTGTGATTTCGCAACGACTTTGTTTTTGTT
GTTACGAAAATTGTAAGCATTGGCAACGACTAAAAAAGTGTTGTGTAAAATACCATCAAAATCAT
Found at i:57016 original size:13 final size:13
Alignment explanation
Indices: 56998--57029 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
56988 ACGGAAAATA
*
56998 ATTGTCACATGGT
1 ATTGTCACATAGT
57011 ATTGTCACATAGT
1 ATTGTCACATAGT
57024 ATTGTC
1 ATTGTC
57030 GGTTATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (13 bp):
ATTGTCACATAGT
Found at i:58258 original size:14 final size:14
Alignment explanation
Indices: 58239--58266 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
58229 ATGCTAAATA
58239 CTTATTTTCTTGTT
1 CTTATTTTCTTGTT
58253 CTTATTTTCTTGTT
1 CTTATTTTCTTGTT
58267 TCATCTTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.07, T:0.71
Consensus pattern (14 bp):
CTTATTTTCTTGTT
Found at i:59544 original size:57 final size:57
Alignment explanation
Indices: 59365--59557 Score: 162
Period size: 57 Copynumber: 3.3 Consensus size: 57
59355 AGTAGTAATA
* * *
59365 TGCAATTGAGTGAGTTATGGTAGAATTGATTTAGGACATCAATTAGGGATTGACAAG-
1 TGCAATTGAGTGATTTACGGTAGGATTGATTTAGGACATCAATTAGGGATTGAC-AGT
* * * * * * *
59422 TGTAATTTAGTGATTTACGGT--GATGTGCAATTCATGAGTGATATCAATTGATAGCAGT-A-AT
1 TGCAATTGAGTGATTTACGGTAGGAT-TG--ATT--T-AG-GACATCAATT-A-GGGATTGACAG
59483 T
57 T
*
59484 TGCAATTGAGTTATTTACGGTAGGATTGATTTAGGACATCAATTAGGGATTGACAGT
1 TGCAATTGAGTGATTTACGGTAGGATTGATTTAGGACATCAATTAGGGATTGACAGT
59541 TGCAATTGAGTGATTTA
1 TGCAATTGAGTGATTTA
59558 AGCTGAAATT
Statistics
Matches: 103, Mismatches: 19, Indels: 28
0.69 0.13 0.19
Matches are distributed among these distances:
55 5 0.05
56 4 0.04
57 44 0.43
58 5 0.05
59 1 0.01
60 1 0.01
61 6 0.06
62 27 0.26
63 4 0.04
64 6 0.06
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (57 bp):
TGCAATTGAGTGATTTACGGTAGGATTGATTTAGGACATCAATTAGGGATTGACAGT
Found at i:59553 original size:119 final size:119
Alignment explanation
Indices: 59340--59557 Score: 348
Period size: 119 Copynumber: 1.8 Consensus size: 119
59330 TAAAGTACAC
* *
59340 GTGATATCAATTGATAGTAGTAATATGCAATTGAGTGAGTTATGGTAGAATTGATTTAGGACATC
1 GTGATATCAATTGATAGCAGTAATATGCAATTGAGTGAGTTACGGTAGAATTGATTTAGGACATC
* *
59405 AATTAGGGATTGACAAGTGTAATTTAGTGATTTACGGTGATGTGCAATTCATGA
66 AATTAGGGATTGACAAGTGCAATTGAGTGATTTACGGTGATGTGCAATTCATGA
* * * *
59459 GTGATATCAATTGATAGCAGTAATTTGCAATTGAGTTATTTACGGTAGGATTGATTTAGGACATC
1 GTGATATCAATTGATAGCAGTAATATGCAATTGAGTGAGTTACGGTAGAATTGATTTAGGACATC
59524 AATTAGGGATTGAC-AGTTGCAATTGAGTGATTTA
66 AATTAGGGATTGACAAG-TGCAATTGAGTGATTTA
59558 AGCTGAAATT
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
118 2 0.02
119 88 0.98
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (119 bp):
GTGATATCAATTGATAGCAGTAATATGCAATTGAGTGAGTTACGGTAGAATTGATTTAGGACATC
AATTAGGGATTGACAAGTGCAATTGAGTGATTTACGGTGATGTGCAATTCATGA
Found at i:60228 original size:21 final size:20
Alignment explanation
Indices: 60195--60241 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
60185 TAAAATACAT
* *
60195 ATTAATGCTAATTAATACTAA
1 ATTAATGCAAATTAAAAC-AA
*
60216 ATTATTGCAAATTAAAACAA
1 ATTAATGCAAATTAAAACAA
60236 ATTAAT
1 ATTAAT
60242 CATTAAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (20 bp):
ATTAATGCAAATTAAAACAA
Found at i:61602 original size:440 final size:440
Alignment explanation
Indices: 60632--61605 Score: 1460
Period size: 440 Copynumber: 2.2 Consensus size: 440
60622 CTCGCTGTCA
* * * * *
60632 ATAAATAAATCATTTTTTTGTTAGTTTATTTATCAAATGAT--TCATATACTTTTATACTTTATG
1 ATAAACAAAT-ATTTTTTTGCTAGATTATTTATCAAATGATCCTCAGAT--TTTTATGCTTTATG
* ** * *
60695 TTATTT-AGGCCTCACAATTTCTAGGTTGGATGACTAAGCGTTTCGACTTTAATTCTTTTATTTT
63 CTATTTAATCCCTCACAATTTCTGGGTTGGACGACTAAGCGTTTCGACTTTAATTCTTTTATTTT
* * * * *
60759 TTGTTTTGCTTGTTCGATCAAGGTGATTCAAGTGTCTATTAAAACGTAATTTCGTGATCTACAAT
128 TTCTTTTGCTTGTCCGATCAAGGTGATTCAAGTGTCTATTAAAACGTAATTTCATAATCTACAAC
* *
60824 TTCCATGAAGGACTCAAAAGTCAATTTTAATGTCTTGATTTTAAAAAATGCTTTTTGAAATTTTG
193 TTCCATGAAGGACTCAAAAGCCAAATTTAATGTCTTGATTTTAAAAAATGCTTTTTGAAATTTTG
* * * *
60889 TGGTCTTGATTGCCGGTCTATTTGATATCCTATAATTTTTGTTCCACTTGTCTGATTGAGCTTAT
258 TGGTCTTGATTGCCGATCTATTTGAGATCCTATAATTTTTGTCCCACTTGTCCGATTGAGCTTAT
* *
60954 TCAAGTGTCGGTTAAAAGGTTATTGTGTGATCTATGGCTTTCGTTAAGGGCTTCAAAGCTGAATT
323 TCAAGTGTCAGTTAAAAGGTTATTGTGTGATCTACGGCTTTCGTTAAGGGCTTCAAAGCTGAATT
61019 TGATTAATGAGTTTCGTGGAGGGTTCAAGAGGGAATTTTTATATTTGGTCTCC
388 TGATTAATGAGTTTCGTGGAGGGTTCAAGAGGGAATTTTTATATTTGGTCTCC
* *
61072 ATAAACAAATATTTTTTTGCTAGATTATATATCAAATGATCCTCAGACTTTTATGCTTTATGCTA
1 ATAAACAAATATTTTTTTGCTAGATTATTTATCAAATGATCCTCAGATTTTTATGCTTTATGCTA
* * * *
61137 TGTAGTCCCTCACAATTTCTGGGTTGGACGACTGAA-CGTTTTGGCTTTAATTCTTTTATTTTTT
66 TTTAATCCCTCACAATTTCTGGGTTGGACGACT-AAGCGTTTCGACTTTAATTCTTTTA-TTTTT
*
61201 TCTTTTGCTTGTCCGATCAAGGTGATTCAAGTGTCTATTAAAAGGTAATTTCATAATCTACAACT
129 TCTTTTGCTTGTCCGATCAAGGTGATTCAAGTGTCTATTAAAACGTAATTTCATAATCTACAACT
* *
61266 TCCATGAAGGACTCAAAAGCCAAATTTAATGTTTTGATTTTAAAATATGC-TTTTGAAATTTTGT
194 TCCATGAAGGACTCAAAAGCCAAATTTAATGTCTTGATTTTAAAAAATGCTTTTTGAAATTTTGT
* * *
61330 GGTCTTGATTGCCTATCTATTTGAGATCGTATAATTTTT-TGCCCACTTGTCCGATTGAGGTTAT
259 GGTCTTGATTGCCGATCTATTTGAGATCCTATAATTTTTGT-CCCACTTGTCCGATTGAGCTTAT
61394 TCAAGTGTCAGTTAAAAGGTTATTGTGTGATCTACGGCTTTCGTTAAGGG-TCTCAAAGCTGAAT
323 TCAAGTGTCAGTTAAAAGGTTATTGTGTGATCTACGGCTTTCGTTAAGGGCT-TCAAAGCTGAAT
*
61458 TTGATTAATGAGTTTCGTGGAGGGTTCAAGAGGGAATTTTTATGTTTGGTCTCC
387 TTGATTAATGAGTTTCGTGGAGGGTTCAAGAGGGAATTTTTATATTTGGTCTCC
* *
61512 ATAAACAAATAATTTTTTTGCTGGATTATTTATCAAATGATCCTCAGATTTTTATGCTTTATGGT
1 ATAAACAAAT-ATTTTTTTGCTAGATTATTTATCAAATGATCCTCAGATTTTTATGCTTTATGCT
* *
61577 ATTTAATCCCTCATAA-TTATGGGTTGGAC
65 ATTTAATCCCTCACAATTTCTGGGTTGGAC
61606 TATTTAATGC
Statistics
Matches: 482, Mismatches: 44, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
439 46 0.10
440 257 0.53
441 179 0.37
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (440 bp):
ATAAACAAATATTTTTTTGCTAGATTATTTATCAAATGATCCTCAGATTTTTATGCTTTATGCTA
TTTAATCCCTCACAATTTCTGGGTTGGACGACTAAGCGTTTCGACTTTAATTCTTTTATTTTTTC
TTTTGCTTGTCCGATCAAGGTGATTCAAGTGTCTATTAAAACGTAATTTCATAATCTACAACTTC
CATGAAGGACTCAAAAGCCAAATTTAATGTCTTGATTTTAAAAAATGCTTTTTGAAATTTTGTGG
TCTTGATTGCCGATCTATTTGAGATCCTATAATTTTTGTCCCACTTGTCCGATTGAGCTTATTCA
AGTGTCAGTTAAAAGGTTATTGTGTGATCTACGGCTTTCGTTAAGGGCTTCAAAGCTGAATTTGA
TTAATGAGTTTCGTGGAGGGTTCAAGAGGGAATTTTTATATTTGGTCTCC
Done.