Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016064.1 Corchorus olitorius cultivar O-4 contig16097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53225

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144--169
2
13.0
2
100
0
52
0
50
0
50
1.00
3410--3647
36
6.6
36
83
9
288
44
9
16
29
1.79
3410--3647
71
3.3
72
81
9
295
44
9
16
29
1.79
4043--4267
36
6.6
36
72
15
201
44
8
17
29
1.79
4132--4234
35
2.9
35
88
1
143
43
8
17
30
1.79
4132--4267
71
1.9
71
87
3
202
43
8
17
30
1.78
4232--4290
27
2.2
27
87
3
84
44
6
15
33
1.73
11213--11272
18
3.3
19
79
13
56
71
0
5
23
1.05
15970--16501
51
10.5
51
80
7
440
43
4
15
36
1.67
16068--16155
31
3.2
31
61
32
81
45
2
15
36
1.59
15970--16572
102
5.9
101
78
8
460
43
4
15
36
1.67
16067--16453
205
1.9
206
82
5
498
44
4
16
34
1.69
16445--16484
19
2.1
19
86
9
55
40
0
22
37
1.54
17119--17410
48
6.1
48
89
1
424
13
22
19
45
1.85
17119--17410
97
3.0
96
87
1
415
13
22
19
45
1.85
22905--22949
20
2.2
21
84
11
58
68
2
20
8
1.27
24312--24605
54
5.5
53
85
6
351
26
13
22
37
1.92
24312--24588
108
2.6
107
88
2
394
26
14
21
37
1.92
24345--24642
162
1.8
162
81
4
368
26
15
22
35
1.94
24580--25263
54
12.7
54
82
6
708
28
17
21
32
1.96
25698--25742
21
2.1
21
87
0
63
31
33
22
13
1.92
26507--26542
19
1.9
18
88
5
54
41
2
22
33
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30075--30232
54
2.9
54
93
0
271
27
18
23
31
1.97
32020--32191
75
2.2
79
80
6
190
41
25
6
26
1.80
32629--32655
13
2.1
13
100
0
54
18
44
7
29
1.77
33249--33351
47
2.2
47
96
1
190
15
21
12
50
1.77
36773--36800
2
14.0
2
100
0
56
50
0
0
50
1.00
36804--36828
2
12.5
2
100
0
50
0
0
48
52
1.00
36973--37057
30
2.8
31
92
3
145
52
18
7
21
1.68
39503--39587
30
2.8
30
85
0
116
23
5
32
37
1.79
39505--39597
30
3.1
30
84
0
114
24
5
30
39
1.78
43698--43749
21
2.5
20
77
20
52
26
3
0
69
1.06
43781--43807
13
2.1
13
100
0
54
29
0
0
70
0.88
43798--43840
18
2.4
19
80
11
54
20
6
0
72
1.08
48505--48543
19
2.1
18
85
4
51
69
0
2
28
1.02
48504--48553
17
2.8
18
79
11
59
66
0
2
32
1.03
49135--49168
16
2.1
16
94
0
59
52
11
8
26
1.67
50766--50822
28
2.0
28
96
0
105
42
14
14
29
1.84
51217--51912
347
2.0
350
89
2
1060
32
17
19
31
1.94
52201--52297
45
2.2
45
84
1
124
39
19
5
36
1.74

Tables:   1

The End!