Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016066.1 Corchorus olitorius cultivar O-4 contig16099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83461

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7389--7421
2
16.5
2
100
0
66
0
51
0
48
1.00
9627--9661
17
2.1
17
88
0
52
31
8
14
45
1.75
9765--9849
45
1.9
44
95
2
152
36
16
11
35
1.85
9826--9861
8
4.5
8
92
0
63
33
11
16
38
1.84
18933--18977
13
3.3
13
84
9
54
4
6
24
64
1.37
24623--24734
54
2.1
55
93
1
190
19
22
17
40
1.92
25079--25146
21
3.3
21
65
19
61
58
1
17
22
1.46
25074--25155
41
2.0
41
100
0
164
60
2
17
19
1.46
28773--28805
2
16.5
2
93
0
57
48
3
0
48
1.17
29251--29339
45
2.0
42
89
6
133
51
7
4
35
1.51
30353--30422
36
1.9
36
97
0
131
61
7
8
22
1.49
30878--31223
180
1.9
179
91
1
568
39
7
13
39
1.74
32839--33026
104
1.8
104
96
0
349
23
17
10
48
1.78
40365--40396
13
2.5
13
89
0
55
12
43
6
37
1.68
40496--40577
41
2.0
41
95
0
146
26
13
19
40
1.89
40576--40612
13
2.8
13
87
0
56
32
8
43
16
1.77
42806--43020
62
3.4
62
91
6
328
36
18
15
29
1.92
50832--50934
53
1.9
54
88
2
145
19
19
24
36
1.94
50836--50935
27
3.7
27
87
1
139
19
18
25
38
1.93
53252--53338
44
2.0
44
97
0
165
24
16
28
31
1.96
57875--57933
29
2.0
29
83
6
73
38
20
13
27
1.90
58076--58154
31
2.5
31
83
0
104
31
10
17
40
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58579--58608
12
2.5
12
94
0
51
26
26
16
30
1.97
63200--63264
33
2.0
33
90
3
105
40
7
23
29
1.82
64886--64923
16
2.4
16
86
4
51
44
0
7
47
1.32
72489--72877
179
2.2
178
82
3
469
36
15
14
33
1.89
74120--74199
19
4.3
20
74
14
66
52
1
1
45
1.16
74125--74198
10
6.7
11
72
26
59
54
1
1
43
1.17
78580--78639
30
2.0
30
83
6
77
43
6
16
33
1.74

Tables:   1

The End!