Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016069.1 Corchorus olitorius cultivar O-4 contig16102, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8753
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:6142 original size:11 final size:11

Alignment explanation


    Indices: 6126--6166  Score: 64
    Period size: 11  Copynumber: 3.7  Consensus size: 11

       6116 TTTTCACCTT

                     **
       6126 GTTCTTCACGA
          1 GTTCTTCACTC

                       
       6137 GTTCTTCACTC
          1 GTTCTTCACTC

                       
       6148 GTTCTTCACTC
          1 GTTCTTCACTC

                    
       6159 GTTCTTCA
          1 GTTCTTCA

       6167 TATTTTCCTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  11   28  1.00

ACGTcount: A:0.12, C:0.32, G:0.12, T:0.44


Consensus pattern (11 bp):   
GTTCTTCACTC
Done.