Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016072.1 Corchorus olitorius cultivar O-4 contig16105, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 915

Length: 1525
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30


Found at i:710 original size:21 final size:21

Alignment explanation


    Indices: 686--758  Score: 65
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        676 GGCTTGGAAT

                                 
        686 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATGGCC

                *          * **  
        707 GGTGGTGGCACGGGCTTAACC
          1 GGTGATGGCACGGGCATGGCC

                *  *       *      
        728 GGTGGTGTCACGGTGAATGGCC
          1 GGTGATGGCACGG-GCATGGCC

               *     
        750 GGTAATGGC
          1 GGTGATGGC

        759 TTGGTAGTGG


Statistics
Matches: 39,  Mismatches: 12, Indels: 1
        0.75            0.23        0.02

Matches are distributed among these distances:
  21   29  0.74
  22   10  0.26

ACGTcount: A:0.15, C:0.21, G:0.45, T:0.19


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATGGCC
Done.