Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016074.1 Corchorus olitorius cultivar O-4 contig16107, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30958

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3614--3655
15
2.7
15
96
3
75
66
14
7
11
1.43
4415--4440
11
2.4
11
100
0
52
69
7
15
7
1.35
19012--19051
19
2.2
18
86
4
53
30
20
5
45
1.72
24171--24230
26
2.3
26
86
8
79
58
5
5
31
1.41
25262--25286
2
12.5
2
100
0
50
48
0
0
52
1.00
25457--25735
144
1.9
143
91
3
454
43
12
5
39
1.65
25865--25939
34
2.2
34
92
0
123
22
12
29
36
1.90
30465--30537
21
3.4
21
88
1
101
15
19
49
16
1.80
30465--30537
11
6.9
10
71
21
51
15
19
49
16
1.80

Tables:   1

The End!