Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016076.1 Corchorus olitorius cultivar O-4 contig16109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155689

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2907--2932
11
2.4
11
100
0
52
69
7
15
7
1.35
18069--18110
15
2.7
15
96
3
75
11
7
14
66
1.43
21060--21096
10
3.5
11
82
17
51
18
43
18
18
1.89
21060--21108
22
2.3
21
89
3
71
16
44
20
18
1.86
21060--21108
11
4.5
11
79
18
50
16
44
20
18
1.86
21463--21492
15
2.1
14
93
6
51
13
16
6
63
1.50
25536--25574
2
19.5
2
100
0
78
48
0
0
51
1.00
25749--25780
10
3.1
11
86
13
50
84
0
9
6
0.78
25749--25782
9
3.4
10
88
12
52
79
0
11
8
0.94
28893--29359
115
4.2
109
84
7
538
29
12
21
37
1.89
29393--29631
118
2.0
118
87
3
347
15
38
2
43
1.60
36110--36135
2
13.0
2
100
0
52
50
0
0
50
1.00
36767--36801
2
17.5
2
100
0
70
48
0
0
51
1.00
40858--40887
15
2.1
15
93
6
53
40
16
20
23
1.91
40945--40981
2
18.5
2
94
0
65
51
2
0
45
1.15
43583--43643
23
2.7
23
92
0
95
9
32
42
14
1.79
43690--43745
23
2.4
23
100
0
112
16
41
32
10
1.82
44069--44118
22
2.3
22
89
6
75
16
8
28
48
1.74
44646--44733
36
2.4
36
98
0
167
35
12
13
38
1.83
55616--55658
2
21.5
2
85
0
59
46
0
0
53
1.00
57648--57899
63
4.0
63
94
0
432
32
16
21
29
1.96
70710--70738
13
2.2
13
100
0
58
37
0
17
44
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70977--71056
35
2.3
35
97
0
151
16
11
22
50
1.76
71984--72254
136
2.0
136
96
0
497
32
13
23
30
1.93
72977--73091
25
4.7
25
83
6
128
24
13
7
54
1.64
72977--73091
24
4.7
24
82
7
124
24
13
7
54
1.64
82492--82527
19
1.9
18
88
5
54
33
22
2
41
1.68
82492--82538
11
4.7
10
80
17
53
31
21
6
40
1.78
91582--91694
21
5.4
21
96
2
201
27
19
27
25
1.99
92564--92610
26
1.9
24
87
12
69
27
27
4
40
1.75
98004--98116
21
5.4
21
94
2
192
28
19
27
24
1.99
99785--99820
19
1.9
18
88
5
54
33
22
2
41
1.68
99785--99831
11
4.7
10
80
17
53
31
21
6
40
1.78
100554--100597
17
2.5
18
77
3
54
63
2
2
31
1.19
100556--100610
22
2.4
23
76
11
60
63
1
1
32
1.15
102833--103358
274
1.9
273
89
1
822
32
21
14
31
1.94
106252--106467
107
2.0
106
95
2
389
26
31
24
18
1.97
121382--121417
17
2.1
17
89
0
54
2
44
0
52
1.15
123342--123384
22
2.0
22
82
17
54
20
2
2
74
1.04
124185--124301
56
2.1
56
96
0
216
33
6
7
52
1.57
124213--124305
26
3.2
31
63
17
81
35
5
7
51
1.53
139059--139225
82
2.0
82
89
0
253
41
11
16
29
1.85
148401--148433
2
16.5
2
100
0
66
51
0
0
48
1.00
149428--149484
20
2.8
20
74
15
53
50
8
5
35
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
149428--149491
21
3.1
20
76
14
60
48
7
6
37
1.57
149516--149564
24
2.0
24
88
0
71
61
4
6
28
1.38
149955--149994
22
1.9
21
85
10
55
55
5
2
37
1.35
151068--151141
28
2.5
29
85
12
98
36
14
29
18
1.91
155294--155342
21
2.3
20
80
10
53
55
0
8
36
1.30

Tables:   1

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