Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016077.1 Corchorus olitorius cultivar O-4 contig16110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71959

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
425--483
29
2.0
29
86
3
82
45
11
8
33
1.71
5093--5146
28
1.9
28
84
0
72
64
12
12
9
1.49
5927--5960
5
6.6
5
96
3
59
58
0
0
41
0.98
9914--9987
37
2.0
37
86
0
103
39
24
9
27
1.86
12912--13065
37
4.1
37
76
8
123
18
39
15
26
1.90
12944--13065
37
3.3
37
77
11
133
18
39
16
26
1.91
13043--13093
20
2.5
20
96
0
93
13
39
17
29
1.88
15600--15625
6
4.3
6
100
0
52
30
15
0
53
1.42
20676--20735
29
2.0
30
84
9
79
25
5
18
51
1.66
26884--27075
41
4.7
40
83
6
224
34
15
15
33
1.90
30629--30657
13
2.1
14
93
6
51
6
13
0
79
0.93
32169--32477
159
1.9
160
88
5
464
27
21
16
33
1.95
37407--37503
32
3.0
32
84
0
122
30
24
22
21
1.99
43165--43209
21
2.1
21
83
0
54
15
22
31
31
1.95
43143--43293
76
2.0
76
80
7
173
16
29
28
25
1.97
48922--48985
33
1.9
34
93
3
112
43
17
7
31
1.77
50063--50100
18
2.1
18
85
9
51
65
7
18
7
1.43
51374--51447
27
2.7
27
93
0
130
18
40
18
21
1.91
52265--52299
17
2.1
17
94
0
61
20
8
17
54
1.68
54026--54065
20
2.0
20
100
0
80
30
15
15
40
1.87
54476--54660
32
5.7
31
84
3
199
33
23
19
23
1.97
54481--54660
64
2.8
64
84
6
238
32
24
19
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54482--54660
96
1.8
98
84
7
249
31
24
19
24
1.98
55809--55842
18
1.9
18
94
5
61
0
2
8
88
0.62
56852--56905
22
2.5
22
93
0
90
27
5
12
53
1.61
57122--57171
24
2.0
26
88
7
77
66
6
8
20
1.40
57880--57904
11
2.3
11
100
0
50
68
8
16
8
1.38
58922--58965
22
2.0
22
100
0
88
50
4
4
40
1.43
59236--59565
178
1.9
178
87
2
484
36
15
13
35
1.86
59233--59605
178
2.1
177
84
4
482
37
14
13
34
1.85
61668--61737
36
1.9
36
97
0
131
42
12
8
35
1.74
61786--61832
23
2.0
24
91
4
78
36
6
8
48
1.59
71185--71350
25
6.6
25
90
0
251
22
18
28
30
1.98

Tables:   1

The End!