Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016080.1 Corchorus olitorius cultivar O-4 contig16113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42492

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
962--1002
18
2.3
18
82
0
55
21
9
31
36
1.86
1325--1390
8
7.9
8
71
8
51
27
0
6
66
1.15
1326--1390
25
2.6
25
100
0
130
27
0
6
66
1.15
2569--2609
10
4.1
10
90
0
64
58
21
0
19
1.39
2566--2607
20
2.1
20
95
0
75
61
16
0
21
1.34
4659--4740
33
2.5
33
97
0
155
15
50
10
23
1.76
7644--7681
14
2.9
13
92
7
60
0
13
0
86
0.56
7648--7683
17
2.3
15
90
9
54
0
11
0
88
0.50
7648--7682
13
2.7
13
86
0
52
0
11
0
88
0.51
8052--8082
2
15.5
2
100
0
62
51
0
48
0
1.00
17273--17310
20
2.0
20
89
5
60
47
28
5
18
1.70
19682--19763
19
4.3
20
75
14
77
54
1
0
43
1.07
19681--19762
12
6.0
14
68
23
50
56
1
0
42
1.07
19728--19762
12
2.9
12
86
0
52
54
2
0
42
1.15
32439--32464
13
2.0
13
100
0
52
46
7
15
30
1.74
37254--37325
2
36.0
2
94
0
126
47
0
52
0
1.00
41119--41149
2
15.0
2
93
6
53
48
3
0
48
1.17

Tables:   1

The End!