Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016081.1 Corchorus olitorius cultivar O-4 contig16114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79232

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1948--2042
45
2.2
43
85
9
122
37
22
4
35
1.73
4407--4457
19
2.7
19
77
14
61
47
0
1
50
1.12
17641--17671
15
2.1
15
93
0
53
51
0
0
48
1.00
23621--23669
25
2.0
25
100
0
98
34
20
32
12
1.90
24489--24530
21
2.0
21
86
9
59
21
0
30
47
1.51
24527--24575
25
2.0
25
92
8
82
34
16
32
16
1.91
25198--25291
45
2.2
43
84
7
120
38
21
4
36
1.73
26025--26128
51
2.0
51
98
0
199
40
13
8
37
1.75
27086--27162
35
2.2
35
97
2
145
63
10
10
15
1.51
30855--30888
17
2.0
17
100
0
68
29
11
29
29
1.92
31654--31716
34
1.9
33
93
6
110
23
33
20
22
1.97
32802--32893
48
1.9
48
90
0
148
46
7
14
31
1.72
32883--32985
42
2.5
42
88
4
156
32
11
18
37
1.87
34400--34448
2
24.0
2
95
4
89
48
0
2
48
1.12
34605--34733
64
2.0
65
96
1
242
45
31
8
13
1.74
40370--40436
30
2.3
30
81
2
82
25
14
26
32
1.95
42286--42366
33
2.4
33
80
12
85
24
11
45
18
1.82
46728--46799
19
3.8
18
78
14
74
58
9
2
29
1.44
50307--50347
21
2.0
21
85
0
55
63
0
24
12
1.28
52837--52876
15
2.6
16
88
4
55
62
12
10
15
1.54
59260--59333
26
2.7
26
84
14
80
41
12
9
36
1.75
62448--62696
115
2.2
115
91
0
399
32
16
16
34
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66216--66250
18
1.9
18
94
0
61
51
11
8
28
1.67
66450--66524
35
2.1
35
95
0
132
42
17
17
22
1.89
68961--68995
6
6.0
6
96
3
63
68
31
0
0
0.90

Tables:   1

The End!