Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016083.1 Corchorus olitorius cultivar O-4 contig16116, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94669

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2178--2242
31
2.1
31
94
0
112
44
13
10
30
1.78
2862--3101
127
1.9
127
87
5
353
35
11
1
52
1.45
3190--3235
7
6.7
7
92
2
67
82
0
13
4
0.81
3277--3371
32
3.0
32
92
4
158
32
15
12
38
1.85
12213--12396
66
2.8
66
85
2
246
19
27
16
35
1.94
12352--12458
55
1.9
55
94
0
187
22
27
17
32
1.96
16672--16712
21
2.0
21
85
9
57
34
9
26
29
1.88
25453--25498
19
2.5
18
86
10
58
41
2
2
54
1.25
26832--26938
55
1.9
55
92
0
178
22
26
19
31
1.98
42054--42091
15
2.6
15
91
4
60
47
0
7
44
1.32
43098--43355
132
2.0
130
86
4
367
50
2
9
37
1.47
44914--45082
93
1.8
93
93
2
295
51
1
13
33
1.52
46563--46719
78
2.0
78
100
0
314
33
11
11
43
1.77
46700--46731
2
16.0
2
100
0
64
50
0
0
50
1.00
48399--48500
31
3.4
31
74
10
102
30
22
11
35
1.90
48601--48658
22
2.6
21
73
13
53
27
5
6
60
1.44
49739--49837
31
3.3
30
78
8
103
37
12
20
30
1.89
51409--51452
7
6.3
7
100
0
88
43
27
15
13
1.85
53105--53129
2
12.5
2
100
0
50
48
0
0
52
1.00
53639--53694
22
2.5
22
82
5
60
35
16
5
42
1.70
53977--54025
21
2.3
21
79
6
55
67
10
6
16
1.39
55022--55109
29
3.0
29
78
3
97
11
10
34
44
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56557--56618
30
2.1
30
84
6
81
32
16
6
45
1.72
56941--57187
22
11.5
23
69
13
111
36
16
9
38
1.81
56941--57043
45
2.3
45
83
8
122
38
16
10
33
1.83
57291--57727
22
19.7
22
67
15
120
35
16
9
38
1.81
57290--57456
88
1.9
88
83
4
221
34
14
9
40
1.79
57290--57484
88
2.2
88
81
5
216
34
14
8
41
1.77
57749--57807
22
2.6
22
79
10
57
47
16
6
28
1.72
57814--57966
22
7.0
22
72
8
114
35
17
10
35
1.84
57811--57963
44
3.5
43
77
7
146
34
18
10
36
1.85
57759--57967
66
3.1
66
79
8
201
37
19
9
33
1.83
58130--58168
20
2.0
20
85
10
53
58
2
5
33
1.33
61047--61083
19
1.9
19
94
0
65
18
8
10
62
1.52
65138--65257
3
39.7
3
91
1
195
62
4
0
33
1.14
73926--74110
92
2.0
92
98
0
361
35
23
12
28
1.91
81736--81780
22
2.0
22
91
0
72
48
8
17
24
1.75
89215--89260
20
2.3
21
82
10
53
41
6
4
47
1.49
91331--91360
5
5.8
5
96
4
51
76
0
23
0
0.78
91320--91366
14
3.1
16
76
17
55
74
0
23
2
0.93
91961--92003
13
3.2
14
84
15
56
32
0
6
60
1.23
94463--94519
30
1.9
30
85
0
78
33
31
17
17
1.93
94618--94665
2
24.0
2
100
0
96
50
0
50
0
1.00

Tables:   1

The End!