Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016086.1 Corchorus olitorius cultivar O-4 contig16119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20507

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
405--429
10
2.5
10
100
0
50
92
0
8
0
0.40
12467--12569
22
4.6
22
74
6
82
37
14
12
34
1.84
12633--12844
22
9.7
22
79
3
153
32
16
13
38
1.87
12595--12841
22
11.1
23
76
10
99
32
17
11
38
1.85
12920--12969
22
2.3
22
89
0
73
42
16
12
30
1.84
13557--14137
22
25.7
22
68
12
193
38
9
15
36
1.81
13548--14734
44
26.7
44
65
13
286
37
9
16
36
1.82
14167--14830
22
29.9
22
65
15
131
37
9
17
35
1.82
14397--14476
23
3.5
22
84
5
88
40
6
11
42
1.66
15901--15931
2
15.5
2
100
0
62
51
0
0
48
1.00
15987--16130
22
6.6
21
76
11
112
40
11
9
38
1.72
16119--16191
21
3.5
20
74
9
58
26
16
10
46
1.80
16435--16522
45
2.0
45
93
0
149
31
15
10
42
1.81
16961--17005
3
14.7
3
95
4
81
66
0
0
33
0.92
17919--17960
22
1.9
22
85
0
57
42
26
16
14
1.86
18427--18516
45
2.1
43
85
6
119
37
21
6
34
1.79

Tables:   1

The End!