Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016087.1 Corchorus olitorius cultivar O-4 contig16120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48859

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2101--2166
27
2.4
28
80
7
73
48
3
6
42
1.43
2089--2269
95
1.9
98
88
3
278
54
4
7
33
1.49
3811--3850
19
2.1
19
95
0
71
40
25
7
27
1.82
4276--4309
2
17.0
2
100
0
68
50
0
0
50
1.00
4419--4448
6
5.0
6
100
0
60
33
33
16
16
1.92
6587--6636
23
2.1
23
85
7
64
50
8
2
40
1.43
13285--13343
6
9.8
6
100
0
118
33
0
0
66
0.92
23370--23420
19
2.7
19
77
14
61
50
1
0
47
1.12
23773--23798
13
2.0
13
100
0
52
53
30
0
15
1.42
28891--28945
23
2.4
23
90
0
92
72
5
9
12
1.26
36156--36189
9
3.7
9
84
7
50
2
11
8
76
1.12
40622--40660
10
3.9
10
89
0
51
28
28
10
33
1.90
47122--47168
23
2.0
23
100
0
94
21
17
25
36
1.94

Tables:   1

The End!