Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016093.1 Corchorus olitorius cultivar O-4 contig16126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26984

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
531--583
20
2.8
18
77
8
52
37
33
15
13
1.86
3829--3946
43
2.7
43
76
2
121
29
30
7
32
1.85
6094--6136
10
4.4
10
85
5
61
74
0
2
23
0.93
6450--6519
26
2.7
26
73
8
72
5
12
21
60
1.53
7265--7417
33
4.5
34
87
4
211
28
15
18
37
1.92
18849--18874
13
2.0
13
100
0
52
15
0
30
53
1.42
19228--19287
18
3.3
18
81
4
66
46
0
1
51
1.10
19229--19285
19
3.1
19
84
2
62
43
0
1
54
1.10
23363--23539
93
1.9
93
92
0
300
51
1
13
33
1.51
23440--23486
22
2.1
22
84
7
60
61
2
12
23
1.42
23825--23886
31
2.0
31
93
0
106
41
6
22
29
1.78

Tables:   1

The End!