Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016095.1 Corchorus olitorius cultivar O-4 contig16128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24766

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
828--881
6
9.3
6
79
4
58
81
0
12
5
0.85
4101--4136
16
2.2
17
90
5
56
50
16
11
22
1.77
5038--5071
13
2.6
13
100
0
68
17
0
38
44
1.49
10645--10670
2
13.0
2
100
0
52
50
0
0
50
1.00
12507--12547
21
2.0
20
95
4
73
19
2
19
58
1.50
20955--21002
5
9.0
5
88
4
60
41
4
0
54
1.20
21096--21341
123
1.9
128
90
7
394
39
9
1
49
1.46
23372--23413
21
2.0
22
85
4
59
14
16
23
45
1.84
23692--23947
124
2.0
127
85
9
353
37
10
1
49
1.49
23933--23971
14
2.9
13
80
3
51
41
2
2
53
1.28

Tables:   1

The End!