Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016096.1 Corchorus olitorius cultivar O-4 contig16129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47473

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
340--374
13
2.8
13
91
4
54
42
2
0
54
1.15
460--713
130
2.0
128
87
8
369
36
10
1
50
1.48
3846--3877
6
5.3
6
100
0
64
53
15
15
15
1.74
9241--9276
10
3.6
10
92
0
63
36
22
11
30
1.89
10577--10648
26
2.8
26
93
0
117
34
20
6
37
1.80
10827--10859
15
2.3
15
90
10
52
60
0
6
33
1.21
11611--11653
23
1.9
23
90
4
70
69
0
6
23
1.12
11611--11670
21
2.7
22
82
12
70
66
0
5
28
1.12
13351--13452
51
2.0
50
81
9
118
21
24
13
40
1.90
18613--18690
27
2.8
29
82
5
88
17
15
23
43
1.87
24264--24365
51
2.0
50
81
9
118
22
23
12
41
1.88
25250--25294
23
2.0
23
82
8
56
42
6
20
31
1.77
25802--25912
36
2.9
38
81
9
111
45
3
3
46
1.37
25789--25881
36
2.6
36
78
8
118
40
5
4
49
1.45
25877--25926
27
2.0
24
84
11
64
56
0
0
44
0.99
33578--33604
12
2.2
12
100
0
54
70
0
7
22
1.12
33580--33623
21
2.1
21
82
0
52
56
2
9
31
1.43
33899--34034
68
2.0
68
88
8
206
25
13
14
46
1.82
36983--37282
149
2.0
148
95
0
537
41
3
13
42
1.61
37309--37334
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!