Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016097.1 Corchorus olitorius cultivar O-4 contig16130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57096

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1887--1912
2
13.0
2
100
0
52
50
0
0
50
1.00
7090--7125
2
18.0
2
100
0
72
50
0
0
50
1.00
15653--15721
21
3.3
21
69
15
70
27
44
21
5
1.75
28193--28230
16
2.4
16
91
4
60
15
5
10
68
1.36
29398--29432
18
1.9
18
94
0
61
42
20
5
31
1.75
29718--30365
161
4.0
161
91
1
1053
27
22
19
30
1.98
29716--30367
326
2.0
325
95
0
1160
27
22
19
30
1.98
31052--31092
21
2.0
21
85
4
57
29
17
17
36
1.92
31578--31608
3
10.3
3
92
0
53
61
0
35
3
1.12
33962--33991
12
2.4
13
94
5
53
66
10
6
16
1.41
36948--37226
41
6.6
42
77
11
277
39
26
9
23
1.86
36947--37243
85
3.5
85
88
2
445
38
26
10
24
1.87
44611--44641
3
10.0
3
93
6
53
64
0
35
0
0.94
45037--45068
2
16.5
2
93
6
57
0
50
0
50
1.00
50004--50037
2
17.5
2
93
6
61
50
0
0
50
1.00
50005--50034
15
2.0
15
100
0
60
53
0
0
46
1.00
50004--50036
17
1.9
17
100
0
66
51
0
0
48
1.00
50698--50735
2
19.0
2
100
0
76
50
0
0
50
1.00
51701--51741
21
2.0
21
85
9
57
58
7
0
34
1.26
52427--52454
14
2.0
14
100
0
56
35
14
7
42
1.73

Tables:   1

The End!