Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016099.1 Corchorus olitorius cultivar O-4 contig16132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71051
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Found at i:1816 original size:22 final size:24
Alignment explanation
Indices: 1774--1822 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
1764 AACTAAAGGG
*
1774 GCTAGCCAGGCGCAGGCCCAGCCT
1 GCTAGCCAGGCACAGGCCCAGCCT
*
1798 GCTAGCCA-GCAC-GGCCCAGCGT
1 GCTAGCCAGGCACAGGCCCAGCCT
1820 GCT
1 GCT
1823 GGGCTTGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 12 0.52
23 3 0.13
24 8 0.35
ACGTcount: A:0.16, C:0.41, G:0.33, T:0.10
Consensus pattern (24 bp):
GCTAGCCAGGCACAGGCCCAGCCT
Found at i:6990 original size:24 final size:24
Alignment explanation
Indices: 6963--7008 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
6953 TACGTCTCCT
* *
6963 GAAAAATCTCCTAGTCCGTCCCCG
1 GAAAAAGCTCCTAGTCCATCCCCG
6987 GAAAAAGCTCCTAGTCCATCCC
1 GAAAAAGCTCCTAGTCCATCCC
7009 ATGGGGCGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.37, G:0.15, T:0.20
Consensus pattern (24 bp):
GAAAAAGCTCCTAGTCCATCCCCG
Found at i:10053 original size:21 final size:21
Alignment explanation
Indices: 10025--10067 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
10015 AAGCAACAAT
10025 ATAAATAAAAAACTAAT-AAA
1 ATAAATAAAAAACTAATGAAA
* *
10045 ATAATATAACAAATTAATGAAA
1 ATAA-ATAAAAAACTAATGAAA
10067 A
1 A
10068 ATGATGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (21 bp):
ATAAATAAAAAACTAATGAAA
Found at i:35145 original size:30 final size:29
Alignment explanation
Indices: 35105--35175 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
35095 TGAGAGGGGG
*
35105 TAAAACGTCCAAAATTGAGAGTT-ATAGGAA
1 TAAAATGTCCAAAATTGA-AGTTCA-AGGAA
**
35135 TAAAATGTCCAAAATTGAAGTTCAAGGGG
1 TAAAATGTCCAAAATTGAAGTTCAAGGAA
35164 TAAAATGTCCAA
1 TAAAATGTCCAA
35176 CGCTACAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 19 0.51
30 18 0.49
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.24
Consensus pattern (29 bp):
TAAAATGTCCAAAATTGAAGTTCAAGGAA
Found at i:35168 original size:29 final size:30
Alignment explanation
Indices: 35101--35175 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 30
35091 CGTTTGAGAG
*
35101 GGGGTAAAACGTCCAAAATTGAGAGTTATA
1 GGGGTAAAATGTCCAAAATTGAGAGTTATA
**
35131 GGAATAAAATGTCCAAAATTGA-AGTTCA-A
1 GGGGTAAAATGTCCAAAATTGAGAGTT-ATA
35160 GGGGTAAAATGTCCAA
1 GGGGTAAAATGTCCAA
35176 CGCTACAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 19 0.49
30 20 0.51
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.23
Consensus pattern (30 bp):
GGGGTAAAATGTCCAAAATTGAGAGTTATA
Found at i:35894 original size:40 final size:41
Alignment explanation
Indices: 35839--35918 Score: 144
Period size: 42 Copynumber: 2.0 Consensus size: 41
35829 GATTTCCCGC
35839 ATAGGTAGGGTGTCGA-GTGTATAATTGAATGTGTGGATGG
1 ATAGGTAGGGTGTCGAGGTGTATAATTGAATGTGTGGATGG
35879 ATAGGTAGGGTGTCGAGTGTGTATAATTGAATGTGTGGAT
1 ATAGGTAGGGTGTCGAG-GTGTATAATTGAATGTGTGGAT
35919 ATATGTGATC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 16 0.42
42 22 0.58
ACGTcount: A:0.25, C:0.03, G:0.39, T:0.34
Consensus pattern (41 bp):
ATAGGTAGGGTGTCGAGGTGTATAATTGAATGTGTGGATGG
Found at i:40205 original size:48 final size:47
Alignment explanation
Indices: 40134--40318 Score: 161
Period size: 48 Copynumber: 4.0 Consensus size: 47
40124 TAAGCTGTTG
**
40134 CATTCATGCTATCATATTCATTCTCTCCTTTTCAATTT-TCTTTATCCA
1 CATTCATGAAATC-TATTCATTCTCTCCTTTTCAATTTGT-TTTATCCA
* *
40182 CATTCATGAAATCGTATTCATTCTCTTCTTCTCAATTTGTTTTATCCA
1 CATTCATGAAATC-TATTCATTCTCTCCTTTTCAATTTGTTTTATCCA
* * *
40230 TATACATGCAATC-A-T-ATT-TACTCC-TTTCAATTTGTTTTATCCA
1 CATTCATGAAATCTATTCATTCT-CTCCTTTTCAATTTGTTTTATCCA
* ** * *
40273 CGTTCATGAAATCATAACCGTT-TCTCC-TTTCAATTTGTTTCATCCA
1 CATTCATGAAATC-TATTCATTCTCTCCTTTTCAATTTGTTTTATCCA
40319 TTTACTGTGC
Statistics
Matches: 114, Mismatches: 17, Indels: 14
0.79 0.12 0.10
Matches are distributed among these distances:
43 28 0.25
44 6 0.05
45 2 0.02
46 23 0.20
47 3 0.03
48 51 0.45
49 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.46
Consensus pattern (47 bp):
CATTCATGAAATCTATTCATTCTCTCCTTTTCAATTTGTTTTATCCA
Found at i:40286 original size:43 final size:42
Alignment explanation
Indices: 40157--40318 Score: 146
Period size: 43 Copynumber: 3.6 Consensus size: 42
40147 ATATTCATTC
40157 TCTCCTTTTCAATTT-TCTTTATCCACATTCATGAAATCGTATTCATT
1 TCTCC-TTTCAATTTGT-TTTATCCACATTCATGAAATC--A-T-ATT
* * * *
40204 CTCTTCTTCTCAATTTGTTTTATCCATATACATGCAATCATATT
1 -TCTCCTT-TCAATTTGTTTTATCCACATTCATGAAATCATATT
*
40248 TACTCCTTTCAATTTGTTTTATCCACGTTCATGAAATCATAACCGTT
1 T-CTCCTTTCAATTTGTTTTATCCACATTCATGAAATCAT-A---TT
*
40295 TCTCCTTTCAATTTGTTTCATCCA
1 TCTCCTTTCAATTTGTTTTATCCA
40319 TTTACTGTGC
Statistics
Matches: 97, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
43 29 0.30
44 9 0.09
45 1 0.01
46 23 0.24
47 5 0.05
48 29 0.30
49 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.06, T:0.47
Consensus pattern (42 bp):
TCTCCTTTCAATTTGTTTTATCCACATTCATGAAATCATATT
Found at i:51062 original size:33 final size:33
Alignment explanation
Indices: 51025--51425 Score: 385
Period size: 33 Copynumber: 12.3 Consensus size: 33
51015 CTTTATTCGC
51025 TGTTTCATT-TTCTTCTTCTCTTCTTCCATTGCT
1 TGTTTC-TTCTTCTTCTTCTCTTCTTCCATTGCT
* *
51058 TGTTTCTTCTTCTTTTTCTCTTCTTCCTTTGCT
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
* *
51091 TGTTT-TAAT-TTCTTCTTTTCTTCCTCCATTGCT
1 TGTTTCT--TCTTCTTCTTCTCTTCTTCCATTGCT
**
51124 TGTTTCTTCTTCTTCTTCTTCTCTTCTTCCATAACT
1 TG--T-TTCTTCTTCTTCTTCTCTTCTTCCATTGCT
* *
51160 TGTTTCTTCCTCTTCTTTTCTTCTTCCATTGCT
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
*
51193 TGTTTCTTCTTC-T-TT-TCTTCTTCCATTGCC
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
* *
51223 TG--T-TTCTTCTTCTGCTCTTC-T--ACTGCT
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
* * *
51250 TGTTTCTTCTTGTTTTTCTCTTCTTCCACTGCT
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
* * * * * *
51283 TGCTTCTTTTTCTTCTTTTCCTCTTCTATAGCT
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
* * * *
51316 TGTTTCTTCTTCTTCTGCTCTTGTACCAGTGCT
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
* * * *
51349 TGCTTCTTTTTCTTCTTTTCCTCTTCCATTGCT
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
* * *
51382 TGTTTCTTCTTCTTCTGCTCTTCTACCAGTGCT
1 TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
51415 TGTTTCTTCTT
1 TGTTTCTTCTT
51426 TGTAAGTTGC
Statistics
Matches: 295, Mismatches: 56, Indels: 34
0.77 0.15 0.09
Matches are distributed among these distances:
27 12 0.04
28 2 0.01
29 3 0.01
30 35 0.12
31 3 0.01
32 4 0.01
33 207 0.70
34 2 0.01
35 2 0.01
36 24 0.08
37 1 0.00
ACGTcount: A:0.05, C:0.28, G:0.08, T:0.59
Consensus pattern (33 bp):
TGTTTCTTCTTCTTCTTCTCTTCTTCCATTGCT
Found at i:51182 original size:102 final size:99
Alignment explanation
Indices: 51034--51243 Score: 298
Period size: 102 Copynumber: 2.1 Consensus size: 99
51024 CTGTTTCATT
** * *
51034 TTCTTCTTCTCTTCTTCCATTGCTTGTTTCTTCTTCTTTTTCTCTTCTTCCTTTGCTTGTTTTAA
1 TTCTTCTTCTCTTCTTCCATAACTTGTTTCTTCCTCTTTTTCTCTTCTTCCATTGCTTG-TTT--
* *
51099 TTTCTTCTTTTCTTCCTCCATTGCTTGTTTCTTCTTC
63 CTTCTTCTTTTCTTCCTCCATTGCCTGTTTCTTCTTC
51136 TTCTTCTTCTCTTCTTCCATAACTTGTTTCTTCCTCTTCTTT-TCTTCTTCCATTGCTTGTTTCT
1 TTCTTCTTCTCTTCTTCCATAACTTGTTTCTTCCTCTT-TTTCTCTTCTTCCATTGCTTGTTTCT
*
51200 TCTTCTTTTCTTCTTCCATTGCCTGTTTCTTCTTC
65 TCTTCTTTTCTTCCTCCATTGCCTGTTTCTTCTTC
*
51235 TGC-TCTTCT
1 TTCTTCTTCT
51244 ACTGCTTGTT
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
98 6 0.06
99 36 0.36
101 3 0.03
102 51 0.52
103 3 0.03
ACGTcount: A:0.04, C:0.29, G:0.06, T:0.61
Consensus pattern (99 bp):
TTCTTCTTCTCTTCTTCCATAACTTGTTTCTTCCTCTTTTTCTCTTCTTCCATTGCTTGTTTCTT
CTTCTTTTCTTCCTCCATTGCCTGTTTCTTCTTC
Found at i:51392 original size:19 final size:19
Alignment explanation
Indices: 51365--51425 Score: 51
Period size: 19 Copynumber: 3.5 Consensus size: 19
51355 TTTTTCTTCT
*
51365 TTTCCTCTTCCATTGCTTG
1 TTTCTTCTTCCATTGCTTG
51384 TTTCTTCTT-C-TT-C-TG
1 TTTCTTCTTCCATTGCTTG
* * *
51399 -CTCTTCTACCAGTGCTTG
1 TTTCTTCTTCCATTGCTTG
51417 TTTCTTCTT
1 TTTCTTCTT
51426 TGTAAGTTGC
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
14 6 0.19
15 3 0.10
16 2 0.06
17 3 0.10
18 3 0.10
19 14 0.45
ACGTcount: A:0.05, C:0.30, G:0.10, T:0.56
Consensus pattern (19 bp):
TTTCTTCTTCCATTGCTTG
Found at i:51722 original size:6 final size:6
Alignment explanation
Indices: 51713--51737 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
51703 AACATCTTTA
51713 TCTCTT TCTCTT TCTCTT TCTCTT T
1 TCTCTT TCTCTT TCTCTT TCTCTT T
51738 GTCTAAGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TCTCTT
Found at i:53481 original size:2 final size:2
Alignment explanation
Indices: 53476--53503 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
53466 TTTAAATCCA
53476 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
53504 TGGGATTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:53779 original size:13 final size:13
Alignment explanation
Indices: 53761--53802 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
53751 TAGAAAAAGG
53761 TGTTAATTGAGGT
1 TGTTAATTGAGGT
*
53774 TGTTAA--CAGG-
1 TGTTAATTGAGGT
53784 TGTTAATTGAGGT
1 TGTTAATTGAGGT
53797 TGTTAA
1 TGTTAA
53803 CAGGTGTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 6 0.25
11 3 0.12
12 3 0.12
13 12 0.50
ACGTcount: A:0.26, C:0.02, G:0.29, T:0.43
Consensus pattern (13 bp):
TGTTAATTGAGGT
Found at i:53788 original size:23 final size:23
Alignment explanation
Indices: 53758--53811 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
53748 CTGTAGAAAA
53758 AGGTGTTAATTGAGGTTGTTAAC
1 AGGTGTTAATTGAGGTTGTTAAC
53781 AGGTGTTAATTGAGGTTGTTAAC
1 AGGTGTTAATTGAGGTTGTTAAC
53804 AGGTGTTA
1 AGGTGTTA
53812 CACCGACTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.26, C:0.04, G:0.31, T:0.39
Consensus pattern (23 bp):
AGGTGTTAATTGAGGTTGTTAAC
Found at i:53899 original size:23 final size:22
Alignment explanation
Indices: 53867--53918 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
53857 TCTCCACCGC
**
53867 TTCTTCCTCTTTTTTCCTCTCCA
1 TTCTTCCTCTTCATTCC-CTCCA
*
53890 TTCTTTCTCTTCATTCCCTCCA
1 TTCTTCCTCTTCATTCCCTCCA
53912 TTCTTCC
1 TTCTTCC
53919 ATGACCTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.06, C:0.40, G:0.00, T:0.54
Consensus pattern (22 bp):
TTCTTCCTCTTCATTCCCTCCA
Found at i:54366 original size:19 final size:18
Alignment explanation
Indices: 54338--54379 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
54328 AATTCATTGT
54338 TTTAATATTAAATTTTTA
1 TTTAATATTAAATTTTTA
*
54356 TTTATATATTATATTTTTA
1 TTTA-ATATTAAATTTTTA
*
54375 CTTAA
1 TTTAA
54380 AAATTACTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTAATATTAAATTTTTA
Found at i:56436 original size:72 final size:72
Alignment explanation
Indices: 56319--56461 Score: 268
Period size: 72 Copynumber: 2.0 Consensus size: 72
56309 GGTCGAAAAA
*
56319 TTTATGATGGGATTTTTGTGAATCTTTGTTAATTGGTCATTTGGATAAAAACATTATATGATATT
1 TTTATGATGGGATCTTTGTGAATCTTTGTTAATTGGTCATTTGGATAAAAACATTATATGATATT
*
56384 GAATAAT
66 AAATAAT
56391 TTTATGATGGGATCTTTGTGAATCTTTGTTAATTGGTCATTTGGATAAAAACATTATATGATATT
1 TTTATGATGGGATCTTTGTGAATCTTTGTTAATTGGTCATTTGGATAAAAACATTATATGATATT
56456 AAATAA
66 AAATAA
56462 ACCGTCAATC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (72 bp):
TTTATGATGGGATCTTTGTGAATCTTTGTTAATTGGTCATTTGGATAAAAACATTATATGATATT
AAATAAT
Found at i:62122 original size:30 final size:30
Alignment explanation
Indices: 62088--62148 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
62078 ATTTATTTAT
*
62088 TTGTGTATTTAGTATGTTGGTAGTTATAGA
1 TTGTGTATTTAGTATGTTGGTAGTTAGAGA
62118 TTGTGTATTTAGTATGTTGGTAGTTAGAGA
1 TTGTGTATTTAGTATGTTGGTAGTTAGAGA
62148 T
1 T
62149 GAAATTAGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (30 bp):
TTGTGTATTTAGTATGTTGGTAGTTAGAGA
Found at i:63280 original size:32 final size:32
Alignment explanation
Indices: 63239--63301 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
63229 TATGAGTACA
63239 TCTTTAGGAGAACATTTTGTTTTACGTACCAC
1 TCTTTAGGAGAACATTTTGTTTTACGTACCAC
* *
63271 TCTTTAGGAGAACTTTTTGTTTTATGTACCA
1 TCTTTAGGAGAACATTTTGTTTTACGTACCA
63302 AATTGGATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (32 bp):
TCTTTAGGAGAACATTTTGTTTTACGTACCAC
Found at i:65004 original size:22 final size:21
Alignment explanation
Indices: 64977--65029 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 21
64967 GAAGTTCGTG
64977 TTTGAAGATTTATTGAAGATAA
1 TTTGAAGA-TTATTGAAGATAA
*
64999 TTTGAAGA--ATTGAAGATGA
1 TTTGAAGATTATTGAAGATAA
65018 -TTGAAGAATTAT
1 TTTGAAG-ATTAT
65030 CTCAAGAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 6 0.22
19 11 0.41
21 2 0.07
22 8 0.30
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.38
Consensus pattern (21 bp):
TTTGAAGATTATTGAAGATAA
Found at i:65023 original size:18 final size:19
Alignment explanation
Indices: 64988--65027 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
64978 TTGAAGATTT
64988 ATTGAAGATAATTTGAAGA
1 ATTGAAGATAATTTGAAGA
*
65007 ATTGAAGATGA-TTGAAGA
1 ATTGAAGATAATTTGAAGA
65025 ATT
1 ATT
65028 ATCTCAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.33
Consensus pattern (19 bp):
ATTGAAGATAATTTGAAGA
Found at i:68916 original size:26 final size:28
Alignment explanation
Indices: 68887--68947 Score: 81
Period size: 26 Copynumber: 2.2 Consensus size: 28
68877 CAAGGCTTCA
68887 TCCTTCTAGATGGGAGATGGA-AA-TCT
1 TCCTTCTAGATGGGAGATGGATAATTCT
* **
68913 TCCTCCTAGATGGTTGATGGATAATTCT
1 TCCTTCTAGATGGGAGATGGATAATTCT
68941 TCCTTCT
1 TCCTTCT
68948 TCCTATCCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 18 0.62
27 2 0.07
28 9 0.31
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (28 bp):
TCCTTCTAGATGGGAGATGGATAATTCT
Done.