Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001610.1 Corchorus olitorius cultivar O-4 contig01610, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 752

Length: 1254
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36


Found at i:396 original size:22 final size:21

Alignment explanation


    Indices: 371--424  Score: 60
    Period size: 19  Copynumber: 2.6  Consensus size: 21

        361 GAAGTTCGTG

                                  
        371 TTTGAAGACTTATTGAAGATAA
          1 TTTGAAGA-TTATTGAAGATAA

                               * 
        393 TTTGAAGA-T-TTGAAGATCA
          1 TTTGAAGATTATTGAAGATAA

                          
        412 -TTGAAGAATTATT
          1 TTTGAAG-ATTATT

        425 TCAAGAAGCA


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  18    6  0.21
  19   10  0.36
  20    2  0.07
  21    2  0.07
  22    8  0.29

ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39


Consensus pattern (21 bp):   
TTTGAAGATTATTGAAGATAA

Found at i:1228 original size:13 final size:13

Alignment explanation


    Indices: 1210--1235  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1200 TGGGTATTTC

                         
       1210 TTAATTCTATGTT
          1 TTAATTCTATGTT

                         
       1223 TTAATTCTATGTT
          1 TTAATTCTATGTT

       1236 GCTTGTTTTG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62


Consensus pattern (13 bp):   
TTAATTCTATGTT
Done.