Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016101.1 Corchorus olitorius cultivar O-4 contig16134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16691
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:3492 original size:21 final size:22

Alignment explanation


    Indices: 3469--3511  Score: 68
    Period size: 23  Copynumber: 1.9  Consensus size: 22

       3459 AAAAAAGGGC

                     *             
       3469 AAAACAAACGTGCAATTACACAA
          1 AAAACAAACATGCAATTACAC-A

                                
       3492 AAAACAAACATGCAATTACA
          1 AAAACAAACATGCAATTACA

       3512 GTCAACAAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.58, C:0.21, G:0.07, T:0.14


Consensus pattern (22 bp):   
AAAACAAACATGCAATTACACA
Done.