Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016102.1 Corchorus olitorius cultivar O-4 contig16135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66805

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
948--1059
33
3.4
33
80
7
120
44
19
9
25
1.81
9273--9618
117
2.9
117
97
0
638
28
27
17
26
1.98
14792--14846
17
3.4
17
76
19
62
5
29
0
65
1.15
14792--14853
17
3.8
17
72
23
51
8
29
0
62
1.23
15324--15428
48
2.1
49
92
3
185
30
7
10
51
1.64
16002--16135
67
2.0
67
100
0
268
34
7
17
40
1.78
21680--21714
11
3.1
11
87
4
52
25
8
2
62
1.38
21788--21812
13
1.9
13
100
0
50
52
0
0
48
1.00
22847--22887
21
2.0
21
85
0
55
21
26
21
29
1.99
22919--22962
22
2.0
22
86
0
61
25
25
22
27
2.00
22901--23017
52
2.2
52
98
0
225
25
23
27
23
2.00
29270--29310
21
2.0
21
85
0
55
21
26
21
29
1.99
29342--29385
22
2.0
22
86
0
61
25
25
22
27
2.00
32791--32833
23
1.9
23
90
4
70
4
2
11
81
0.93
42305--42369
27
2.4
27
73
0
67
16
20
27
35
1.94
43712--43765
26
2.0
27
86
13
76
27
9
9
53
1.63
43949--43994
23
2.0
24
86
4
67
13
19
10
56
1.66
43968--44007
19
2.1
19
85
0
53
12
17
10
60
1.59
60388--60703
39
8.4
39
68
20
142
23
23
16
36
1.94
60597--60703
39
2.7
39
85
1
151
22
22
14
40
1.91
61311--61364
28
2.0
27
86
13
76
31
9
5
53
1.56
61547--61592
23
2.0
24
86
4
67
13
19
10
56
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61566--61603
19
2.0
19
89
0
58
13
21
10
55
1.67

Tables:   1

The End!