Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016104.1 Corchorus olitorius cultivar O-4 contig16137, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71715

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21089--21118
2
15.0
2
100
0
60
50
0
0
50
1.00
25809--25834
2
13.0
2
100
0
52
50
0
0
50
1.00
26767--26809
18
2.3
18
84
11
52
53
2
2
41
1.26
26763--26811
16
2.9
18
76
14
59
51
2
2
44
1.24
28588--28729
49
3.0
48
81
11
148
51
7
14
26
1.68
32062--32095
4
8.5
4
86
0
50
50
2
0
47
1.16
32062--32095
6
5.7
6
92
0
50
50
2
0
47
1.16
34692--35618
434
2.1
431
83
5
1148
30
14
12
41
1.84
46522--46862
78
4.4
78
87
2
409
41
14
10
34
1.80
63859--63888
15
2.0
15
100
0
60
53
0
33
13
1.40
63861--63895
15
2.3
15
90
0
52
57
0
37
5
1.23
65373--65412
21
1.9
21
100
0
80
55
0
10
35
1.34
66568--66701
66
2.0
67
94
1
234
32
11
8
47
1.70
67873--67919
18
2.5
20
77
19
57
44
17
0
38
1.48
69514--69550
14
2.5
16
79
20
53
32
5
18
43
1.73
69684--69725
19
2.2
19
91
0
66
50
11
11
26
1.74
71040--71072
16
2.1
16
100
0
66
24
30
18
27
1.98

Tables:   1

The End!