Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016105.1 Corchorus olitorius cultivar O-4 contig16138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36971

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5281--5498
109
2.0
109
93
1
375
32
11
13
42
1.80
12647--12672
13
2.0
13
100
0
52
69
0
15
15
1.20
13215--13252
11
3.5
11
89
10
51
39
0
2
57
1.12
22014--22136
61
2.0
61
95
1
219
33
17
0
49
1.47
24733--24763
15
2.0
16
93
6
55
35
6
0
58
1.24
24956--25001
19
2.4
19
86
10
67
2
0
13
84
0.71
24959--24989
6
5.0
6
96
4
53
0
0
16
83
0.64
25254--25350
49
2.0
50
91
6
162
36
9
26
27
1.87
25443--25511
36
1.9
36
93
0
120
53
15
8
21
1.69
25716--25750
18
1.9
18
88
0
52
45
0
2
51
1.16
27080--27187
51
2.1
51
81
6
121
19
25
12
41
1.87

Tables:   1

The End!