Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016108.1 Corchorus olitorius cultivar O-4 contig16141, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 817

Length: 1363
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30


Found at i:598 original size:36 final size:36

Alignment explanation


    Indices: 498--587  Score: 162
    Period size: 36  Copynumber: 2.5  Consensus size: 36

        488 TGCCTTCTAG

                *                               
        498 TCGACTTGCTTAAGTCGACTATTCCCTTGGATGAAA
          1 TCGATTTGCTTAAGTCGACTATTCCCTTGGATGAAA

                            *                   
        534 TCGATTTGCTTAAGTCTACTATTCCCTTGGATGAAA
          1 TCGATTTGCTTAAGTCGACTATTCCCTTGGATGAAA

                              
        570 TCGATTTGCTTAAGTCGA
          1 TCGATTTGCTTAAGTCGA

        588 TTTCTTCCTT


Statistics
Matches: 51,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   51  1.00

ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37


Consensus pattern (36 bp):   
TCGATTTGCTTAAGTCGACTATTCCCTTGGATGAAA
Done.