Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016109.1 Corchorus olitorius cultivar O-4 contig16142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39618

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6268--6508
41
5.9
41
84
5
290
37
19
14
29
1.90
7544--7586
21
2.0
21
100
0
86
27
23
30
18
1.98
8270--8398
62
2.1
63
83
1
161
44
14
20
20
1.87
9183--9383
41
4.9
41
83
5
226
38
20
13
27
1.90
9183--9383
85
2.4
82
82
7
228
38
20
13
27
1.90
9906--9958
27
2.0
27
85
7
72
79
5
11
3
1.03
15689--15793
29
3.6
29
84
3
122
20
16
21
40
1.91
24044--24104
2
33.5
2
81
18
80
47
0
0
52
1.00
24042--24104
17
3.5
19
87
10
87
47
0
0
52
1.00
24416--24440
10
2.5
10
100
0
50
24
8
16
52
1.70
25278--25388
54
2.0
55
96
3
206
33
24
1
40
1.66
25452--25534
42
2.0
42
92
0
139
31
6
15
46
1.70
30444--30475
2
16.0
2
100
0
64
50
0
0
50
1.00
31436--31460
13
1.9
13
100
0
50
32
0
16
52
1.44

Tables:   1

The End!