Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016110.1 Corchorus olitorius cultivar O-4 contig16143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32297

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2371--2417
2
23.5
2
95
0
76
51
4
0
44
1.21
3500--3529
13
2.3
13
94
0
51
23
3
16
56
1.55
12562--12596
2
17.5
2
100
0
70
51
0
0
48
1.00
12659--12735
22
3.5
22
82
1
93
41
11
7
38
1.71
12658--12757
43
2.3
44
84
1
121
42
13
9
36
1.75
12784--12823
20
2.0
21
90
5
64
27
15
10
47
1.77
14744--14796
6
8.4
7
93
4
55
66
1
0
32
1.03
14753--14796
3
14.7
3
100
0
88
68
0
0
31
0.90
15535--15573
3
13.0
3
100
0
78
66
0
0
33
0.92
17812--18023
105
2.0
105
98
0
406
52
6
8
33
1.55
18187--18331
73
2.0
72
87
5
211
38
7
18
35
1.79
19200--19296
6
13.7
7
84
12
64
57
3
2
37
1.26
19205--19229
9
2.8
9
100
0
50
48
0
8
44
1.32
19227--19291
3
21.7
3
93
0
112
63
3
0
33
1.10
21344--21391
25
1.9
25
91
0
78
10
16
33
39
1.83
24554--24596
13
3.4
12
83
6
50
2
18
0
79
0.85
26730--26805
38
2.0
38
97
0
143
10
22
5
61
1.48
29082--29120
14
2.8
13
88
7
51
46
0
0
53
1.00
32110--32171
26
2.5
23
80
19
72
29
9
1
59
1.38

Tables:   1

The End!