Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016111.1 Corchorus olitorius cultivar O-4 contig16144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10368

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1299--1366
34
2.0
34
91
0
109
26
0
23
50
1.50
2432--2471
18
2.2
18
91
8
64
70
10
20
0
1.16
3184--3319
71
1.9
71
92
1
229
36
10
7
45
1.66
3715--3855
71
2.0
71
90
1
203
36
10
7
46
1.66
3970--4111
49
3.0
47
84
11
164
51
5
15
27
1.66
6710--6817
30
3.6
30
77
7
103
15
24
21
38
1.92
6715--6814
15
6.7
14
76
10
74
16
24
23
37
1.94
8045--8114
18
3.9
18
88
0
104
12
20
40
27
1.88
8807--8948
49
3.0
47
85
9
180
52
5
14
26
1.64
10225--10262
9
4.3
9
90
3
60
31
23
0
44
1.54
10225--10262
18
2.2
17
95
4
67
31
23
0
44
1.54

Tables:   1

The End!