Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016112.1 Corchorus olitorius cultivar O-4 contig16145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66822

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1034--1131
48
2.0
48
96
0
178
25
10
14
50
1.74
1039--1119
27
3.2
27
62
25
68
27
12
13
46
1.79
2701--2731
14
2.2
14
100
0
62
64
0
12
22
1.27
5139--5173
2
17.5
2
93
0
61
51
0
0
48
1.00
5623--5765
74
1.9
74
88
5
218
40
9
11
37
1.75
5626--5784
74
2.2
73
82
8
180
41
10
12
35
1.77
8336--8503
75
2.2
75
81
6
180
19
22
17
41
1.91
9234--9263
2
15.0
2
100
0
60
50
0
0
50
1.00
26268--26369
51
2.0
50
80
12
111
21
22
13
42
1.88
30908--31012
52
2.0
52
96
0
192
20
13
13
52
1.74
32291--32326
18
2.0
18
94
0
63
52
11
13
22
1.72
32956--32980
2
12.5
2
100
0
50
52
0
0
48
1.00
33751--33811
27
2.3
27
83
11
72
45
1
9
42
1.47
41479--41542
21
3.2
20
82
8
76
35
10
21
31
1.88
51970--52022
2
28.0
2
77
11
58
50
1
0
47
1.12
58118--58148
14
2.2
14
100
0
62
16
16
6
61
1.54
59602--59663
30
2.1
30
96
0
115
25
20
4
48
1.70
60837--60886
26
1.9
26
91
0
82
24
12
22
42
1.87
62195--62236
22
1.9
22
100
0
84
26
33
11
28
1.92

Tables:   1

The End!