Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016118.1 Corchorus olitorius cultivar O-4 contig16151, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52957

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
711--800
33
2.7
33
84
3
101
35
18
5
40
1.75
5985--6016
12
2.7
12
100
0
64
68
0
15
15
1.21
7984--8022
20
2.0
20
85
10
53
28
5
2
64
1.28
8188--8336
22
6.7
22
69
14
101
38
11
14
36
1.82
8399--8839
22
19.9
22
70
11
150
39
9
16
34
1.81
8664--8812
66
2.3
66
81
0
172
40
10
15
34
1.81
8918--9420
22
23.0
22
74
8
307
35
9
18
36
1.83
9106--9252
23
6.5
23
86
4
167
34
7
19
38
1.80
9431--9530
22
4.6
21
73
9
76
41
12
9
38
1.74
9658--10291
22
28.5
22
68
15
245
35
16
9
38
1.81
9628--9818
44
4.4
44
75
10
151
35
12
9
42
1.75
10427--10465
20
2.0
20
85
10
53
64
2
5
28
1.28
10714--10758
14
3.2
14
81
6
56
53
0
2
44
1.13
13326--13441
61
1.9
60
82
5
144
47
13
17
21
1.82
13354--13472
61
2.0
61
81
9
145
48
15
14
21
1.80
13492--13550
22
2.7
22
84
10
68
44
11
5
38
1.63
15039--15064
2
13.0
2
100
0
52
50
0
0
50
1.00
15399--15431
17
1.9
17
88
11
50
30
6
18
45
1.73
20843--20880
6
6.5
6
96
3
69
50
0
15
34
1.45
35490--35518
2
14.5
2
100
0
58
48
0
0
51
1.00
36119--36164
22
2.0
23
84
12
60
28
4
13
54
1.57
52266--52336
29
2.4
30
79
11
83
39
21
18
21
1.93

Tables:   1

The End!