Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001612.1 Corchorus olitorius cultivar O-4 contig01612, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3033
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:2117 original size:48 final size:47

Alignment explanation


    Indices: 2042--2177  Score: 177
    Period size: 49  Copynumber: 2.9  Consensus size: 47

       2032 GAGTGTGCCA

                        *         *         *               
       2042 ATCAATTTTGTCAAAAAATTGATAAAAAGTGCGA-TGAAAATTAAAAG
          1 ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAAGT-AAAATTAAAAG

                                                             
       2089 ATCAATTTTGTCTTAAAAATTGAGAAAAAGATGCAAGTAAAATTAAAAG
          1 ATCAATTTTGTC-TAAAAATTGAGAAAAAG-TGCAAGTAAAATTAAAAG

            *           *                            
       2138 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGC-AGTAAAA
          1 ATCAATTTTGT-CTAAAAATTGAGAAAAAGTGCAAGTAAAA

       2178 AGTAAAGGAT


Statistics
Matches: 80,  Mismatches: 5, Indels: 8
        0.86            0.05        0.09

Matches are distributed among these distances:
  47   19  0.24
  48   18  0.22
  49   42  0.52
  50    1  0.01

ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29


Consensus pattern (47 bp):   
ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAAGTAAAATTAAAAG

Done.