Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016124.1 Corchorus olitorius cultivar O-4 contig16157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50664

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1332--1373
15
2.7
15
92
3
66
11
9
14
64
1.50
2834--3907
54
20.0
54
87
5
1456
28
19
5
46
1.73
2834--3907
161
6.7
162
86
6
1472
28
19
5
46
1.73
2834--3907
107
10.0
108
87
5
1441
28
19
5
46
1.73
14980--15100
44
2.9
41
83
3
152
42
26
9
21
1.84
14984--15100
41
2.7
44
85
3
150
41
26
10
21
1.85
18001--18031
9
3.6
9
95
4
55
61
6
0
32
1.21
19166--19281
48
2.4
48
98
0
223
32
30
6
30
1.84
31776--31810
5
7.0
5
90
0
52
57
0
40
2
1.14
37618--37702
43
2.0
41
84
4
107
27
12
11
48
1.76
37729--37828
50
2.0
52
82
11
127
40
10
13
37
1.77
40847--40934
42
2.1
42
82
0
104
17
47
21
13
1.81
41124--41178
21
2.6
21
85
0
65
18
49
20
12
1.79
43074--43098
8
3.1
8
100
0
50
48
0
28
24
1.52
46786--46858
28
2.5
29
80
6
85
54
17
5
21
1.63
49553--49682
23
5.5
23
70
17
95
20
25
7
46
1.77
49551--49691
48
2.9
48
94
0
246
21
24
9
45
1.80
49576--49659
25
3.4
25
69
12
84
21
23
10
44
1.84

Tables:   1

The End!