Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016127.1 Corchorus olitorius cultivar O-4 contig16160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36310

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1161--1203
11
3.9
11
79
11
52
16
30
16
37
1.91
1159--1205
22
2.1
22
88
7
69
14
31
14
38
1.87
2979--3026
18
2.7
18
84
12
64
52
0
2
45
1.12
4045--4090
11
4.5
11
76
15
53
30
17
34
17
1.93
7932--7989
29
2.0
29
83
6
73
29
18
18
32
1.96
11184--11232
25
2.0
25
95
0
89
30
16
10
42
1.81
11232--11270
19
2.1
19
95
0
69
28
12
15
43
1.83
12053--12118
23
3.0
22
80
6
71
9
21
0
69
1.15
13019--13067
25
2.0
25
92
4
82
8
20
12
59
1.58
16196--16223
2
14.0
2
100
0
56
50
0
0
50
1.00
16829--17046
109
2.0
109
93
0
373
31
10
13
44
1.76
17617--17661
21
2.1
21
87
0
63
53
2
0
44
1.13
17856--17901
23
2.0
23
86
0
65
45
17
8
28
1.78
20419--20473
17
3.2
17
80
10
58
38
21
18
21
1.94
24515--24555
20
2.0
20
100
0
82
41
9
24
24
1.85
30365--30466
51
2.0
50
83
9
127
21
22
13
42
1.88
31323--31394
34
2.1
34
84
0
90
36
23
4
36
1.74
31601--31627
12
2.2
12
100
0
54
37
14
25
22
1.93
35183--35223
11
3.9
11
84
6
50
68
12
17
2
1.31
36119--36228
38
2.9
37
77
9
125
35
16
16
31
1.91

Tables:   1

The End!