Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016133.1 Corchorus olitorius cultivar O-4 contig16166, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33760

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351--382
3
10.7
3
100
0
64
65
0
0
34
0.93
836--906
34
2.1
34
91
0
115
28
2
19
49
1.62
2185--2247
33
1.9
33
86
0
90
23
28
14
33
1.94
3284--3413
65
2.0
65
89
0
197
23
28
26
22
1.99
8579--8619
21
2.0
21
90
0
64
29
26
7
36
1.83
9707--9836
65
2.0
65
89
0
197
23
28
26
22
1.99
16588--17059
184
2.6
178
87
5
678
48
9
9
32
1.69
20128--20175
11
4.7
11
80
12
50
39
10
20
29
1.86
21555--21596
15
2.7
15
88
3
57
9
11
14
64
1.50
22295--22338
21
2.0
22
86
4
63
29
18
27
25
1.98
28205--28243
19
2.1
18
90
4
60
38
20
2
38
1.66
31245--31505
129
2.0
129
96
0
486
36
19
8
36
1.81

Tables:   1

The End!