Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016135.1 Corchorus olitorius cultivar O-4 contig16168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43389

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3082--3128
19
2.3
21
82
7
53
63
10
4
21
1.43
14183--14241
30
2.0
30
86
6
84
23
15
3
57
1.53
21984--22059
27
2.9
25
90
7
107
17
23
11
47
1.80
22147--22184
18
2.1
19
85
14
53
34
2
10
52
1.50
22331--22355
2
12.5
2
100
0
50
48
0
0
52
1.00
24181--24596
216
1.9
216
96
0
760
33
12
17
36
1.87
24837--24927
33
2.8
33
85
6
105
24
19
24
31
1.98
25404--25492
16
5.6
16
72
0
79
6
16
39
37
1.76
25404--25484
32
2.5
32
93
0
135
6
17
38
38
1.75
25666--25731
12
5.3
12
74
18
64
54
3
0
42
1.15
25660--25731
37
1.9
36
81
15
78
51
2
1
44
1.24
25706--25730
2
12.5
2
100
0
50
52
0
0
48
1.00
26224--26253
15
2.0
15
93
0
51
36
6
3
53
1.44
29684--29723
20
2.0
21
90
5
64
50
17
5
27
1.67
31783--31829
24
2.0
24
83
8
60
29
10
10
48
1.71
32346--32378
17
2.0
17
88
5
50
39
12
6
42
1.67

Tables:   1

The End!