Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016139.1 Corchorus olitorius cultivar O-4 contig16172, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1422
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.21


Found at i:832 original size:21 final size:21

Alignment explanation


    Indices: 794--834  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        784 TACATGCCCG

                    *   **       
        794 GCCATCCGTGCTTTCCTCCGC
          1 GCCATCCGCGCTACCCTCCGC

                                
        815 GCCATCCGCGCTACCCTCCG
          1 GCCATCCGCGCTACCCTCCG

        835 AGTCTTATGC


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.07, C:0.51, G:0.20, T:0.22


Consensus pattern (21 bp):   
GCCATCCGCGCTACCCTCCGC

Found at i:995 original size:22 final size:21

Alignment explanation


    Indices: 970--1012  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        960 CCAAGTCATT

                     *            
        970 ACCGCCCATTCACCGTGCCATC
          1 ACCGCCCATGC-CCGTGCCATC

                *                
        992 ACCGGCCATGCCCGTGCCATC
          1 ACCGCCCATGCCCGTGCCATC

       1013 GCCATTCCAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.16, C:0.49, G:0.19, T:0.16


Consensus pattern (21 bp):   
ACCGCCCATGCCCGTGCCATC
Done.