Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016140.1 Corchorus olitorius cultivar O-4 contig16173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9681
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Found at i:9389 original size:133 final size:133
Alignment explanation
Indices: 9151--9418 Score: 527
Period size: 133 Copynumber: 2.0 Consensus size: 133
9141 ATGTTATCTG
*
9151 CAGAAGGAAAGCTACCGGACTTGTTAGTTAACGCAGTTGAAGATGGATCAGAAGATAGGTGCCCA
1 CAGAAGGAAAGCTACCGGACTTGTTAGTTAACGCAATTGAAGATGGATCAGAAGATAGGTGCCCA
9216 TGGATCTACCCCTTTGAACCAGGATCAGAGATGGACAGTTGGACTGAGTTCGAATTTCCAGTTTT
66 TGGATCTACCCCTTTGAACCAGGATCAGAGATGGACAGTTGGACTGAGTTCGAATTTCCAGTTTT
9281 TAT
131 TAT
9284 CAGAAGGAAAGCTACCGGACTTGTTAGTTAACGCAATTGAAGATGGATCAGAAGATAGGTGCCCA
1 CAGAAGGAAAGCTACCGGACTTGTTAGTTAACGCAATTGAAGATGGATCAGAAGATAGGTGCCCA
9349 TGGATCTACCCCTTTGAACCAGGATCAGAGATGGACAGTTGGACTGAGTTCGAATTTCCAGTTTT
66 TGGATCTACCCCTTTGAACCAGGATCAGAGATGGACAGTTGGACTGAGTTCGAATTTCCAGTTTT
9414 TAT
131 TAT
9417 CA
1 CA
9419 ACAAGGAAGA
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 134 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (133 bp):
CAGAAGGAAAGCTACCGGACTTGTTAGTTAACGCAATTGAAGATGGATCAGAAGATAGGTGCCCA
TGGATCTACCCCTTTGAACCAGGATCAGAGATGGACAGTTGGACTGAGTTCGAATTTCCAGTTTT
TAT
Done.