Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016142.1 Corchorus olitorius cultivar O-4 contig16175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5225

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2173--2343
77
2.2
78
84
7
224
22
21
16
39
1.92
2207--2377
78
2.2
77
78
7
177
25
21
16
37
1.93
2443--2505
33
1.9
33
87
6
92
26
22
17
33
1.96
2058--2579
38
13.7
38
73
12
258
25
19
17
37
1.93
3001--3041
21
2.0
21
95
0
73
19
14
14
51
1.77
3007--3050
21
2.1
21
86
0
61
18
18
11
52
1.74
3056--3129
36
2.1
36
92
0
121
32
17
4
45
1.67
3984--4132
17
8.4
17
85
7
181
58
19
4
18
1.55
3983--4133
70
2.1
71
91
4
241
58
19
3
17
1.54
3984--4139
53
2.9
53
89
5
215
58
19
4
17
1.56
4848--4878
15
2.1
15
93
0
53
70
6
9
12
1.31

Tables:   1

The End!