Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016144.1 Corchorus olitorius cultivar O-4 contig16177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18577

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1217--1268
22
2.4
22
83
6
61
36
17
7
38
1.78
5366--5420
27
2.0
27
82
13
67
43
7
38
10
1.68
7107--7151
15
3.0
15
90
6
65
17
6
11
64
1.46
7458--7572
51
2.2
54
87
9
166
31
5
15
47
1.67
11085--11140
26
2.2
26
100
0
112
17
25
10
46
1.80
14915--15047
52
2.5
53
80
10
146
32
21
12
33
1.91
15013--15146
37
3.6
37
80
7
164
30
16
16
36
1.91
15013--15178
74
2.3
73
83
4
201
29
15
16
37
1.90
15016--15186
37
4.7
35
79
10
150
29
15
16
38
1.90

Tables:   1

The End!