Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016145.1 Corchorus olitorius cultivar O-4 contig16178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1860
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30


Found at i:301 original size:15 final size:16

Alignment explanation


    Indices: 268--307  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        258 TTCCTTTGTT

                            
        268 TTGTTTTCTAGTATAA
          1 TTGTTTTCTAGTATAA

                        *   
        284 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTATAA

                     
        299 TTGTTTTCT
          1 TTGTTTTCT

        308 TTCAACCTCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.15, C:0.07, G:0.12, T:0.65


Consensus pattern (16 bp):   
TTGTTTTCTAGTATAA
Done.