Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016148.1 Corchorus olitorius cultivar O-4 contig16181, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7907
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32


Found at i:347 original size:35 final size:35

Alignment explanation


    Indices: 306--611  Score: 549
    Period size: 35  Copynumber: 8.7  Consensus size: 35

        296 TGAGTTCGTA

                       *               *       
        306 TTGAAGATGCTACACCGAGTCATCTGACTTTGTCT
          1 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

                       *               *       
        341 TTGAAGATGCTACACCGAGTCATCTGACTTTGTCT
          1 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

                                 *             
        376 TTGAAGATGCTGCACCGAGTCGTCTGAATTTGTCT
          1 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

                       *                       
        411 TTGAAGATGCTACACCGAGTCATCTGAATTTGTCT
          1 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

                                               
        446 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT
          1 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

                                               
        481 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT
          1 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

                                               
        516 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT
          1 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

                                               
        551 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT
          1 TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

                           *          
        586 TTGAAGATGCTGCACTGAGTCATCTG
          1 TTGAAGATGCTGCACCGAGTCATCTG

        612 TATTCCTGAG


Statistics
Matches: 264,  Mismatches: 7, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  35  264  1.00

ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34


Consensus pattern (35 bp):   
TTGAAGATGCTGCACCGAGTCATCTGAATTTGTCT

Done.