Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016161.1 Corchorus olitorius cultivar O-4 contig16194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21061

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1414--1453
19
2.1
19
95
0
71
45
5
0
50
1.23
1724--1791
27
2.5
27
88
4
93
19
45
14
20
1.85
3902--4112
107
2.0
105
89
6
322
50
2
12
34
1.53
6073--6245
22
7.9
22
75
12
142
39
9
15
36
1.79
8419--9003
293
2.0
291
92
2
976
24
17
16
41
1.89
9367--9395
14
2.1
14
100
0
58
41
6
13
37
1.72
12536--12591
21
2.8
19
81
5
67
32
21
10
35
1.88
12726--12816
16
5.7
16
72
10
87
7
14
39
38
1.75
12727--12816
32
2.8
32
89
0
144
7
14
40
37
1.75
13070--13150
40
2.1
39
95
2
144
39
20
16
23
1.92
13292--13364
31
2.4
31
76
17
80
61
8
4
26
1.42
13781--13840
23
2.6
23
75
17
61
11
21
38
28
1.89
13846--13887
16
2.6
16
80
0
57
7
14
40
38
1.73
19996--20072
33
2.4
33
84
2
93
36
19
22
22
1.95

Tables:   1

The End!