Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016162.1 Corchorus olitorius cultivar O-4 contig16195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36154

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9333--9357
13
1.9
13
100
0
50
40
12
0
48
1.40
10386--10424
20
2.0
20
85
10
53
28
5
2
64
1.28
10590--10740
22
6.9
22
68
13
69
36
10
17
35
1.84
10642--10741
22
4.5
22
72
14
80
37
12
16
35
1.85
10587--10785
66
3.0
66
80
3
188
35
9
17
38
1.82
10816--11212
22
17.9
22
70
18
209
39
9
17
33
1.83
11005--11237
44
5.3
42
72
18
165
42
10
15
31
1.81
11440--11811
22
16.8
22
69
14
144
37
10
15
36
1.82
11778--11824
22
2.1
22
84
0
58
53
8
8
29
1.61
13168--13401
22
10.5
22
73
9
127
35
9
18
36
1.83
13406--13819
22
18.7
21
68
15
133
39
8
16
35
1.80
13674--13841
44
3.8
43
73
9
142
41
10
13
35
1.77
13673--13800
66
1.9
65
81
6
150
42
9
13
35
1.76
13678--13844
88
1.9
87
81
7
203
41
10
13
34
1.78
13674--13843
22
7.7
22
75
7
121
41
10
12
35
1.77
14134--14237
23
4.6
23
80
10
108
35
8
14
41
1.77
13925--14349
22
19.6
22
69
14
199
37
9
15
37
1.80
15851--15886
19
1.9
18
88
5
54
27
22
8
41
1.82
18498--18541
22
2.0
22
82
8
54
31
22
11
34
1.90
26180--26229
22
2.3
22
85
0
73
28
14
26
32
1.94
26226--26272
22
2.1
22
88
0
67
55
2
14
27
1.51
26299--26346
22
2.2
22
81
7
53
50
8
14
27
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27895--27945
26
2.0
26
96
0
93
41
1
3
52
1.31

Tables:   1

The End!