Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016163.1 Corchorus olitorius cultivar O-4 contig16196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23684

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
335--384
20
2.5
20
96
0
91
22
8
54
16
1.68
387--429
17
2.5
18
81
11
63
46
11
6
34
1.67
462--493
2
16.0
2
93
0
55
46
3
0
50
1.17
1291--1577
150
1.9
149
86
4
409
51
4
7
37
1.49
2525--2574
17
2.9
17
93
0
82
42
28
16
14
1.86
3278--3324
22
2.1
22
88
0
67
61
0
12
25
1.31
3201--3385
93
2.0
93
92
0
307
51
2
12
32
1.52
4257--4455
100
2.0
102
87
2
294
52
2
12
33
1.52
9499--9573
37
2.0
37
80
14
84
38
4
4
53
1.39
11221--11247
14
1.9
14
100
0
54
44
0
0
55
0.99
12073--12106
2
17.0
2
88
11
52
50
2
0
47
1.16
13581--13621
7
5.9
7
88
11
66
85
0
0
14
0.60
13579--13621
15
2.9
15
86
6
61
86
0
0
13
0.58
13579--13618
11
3.8
11
81
18
50
85
0
0
15
0.61
20093--20125
2
16.5
2
100
0
66
48
0
0
51
1.00
23584--23671
2
44.0
2
100
0
176
50
50
0
0
1.00

Tables:   1

The End!