genome.fa.s16164.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016164.1 Corchorus olitorius cultivar O-4 contig16197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123087

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014--1110	34	2.9	34	95	1	169	22	12	22	42	1.87
1107--1554	60	7.5	60	84	5	518	23	18	18	39	1.92
1108--1554	121	3.7	119	82	6	505	23	18	18	39	1.92
1107--1554	181	2.5	178	83	5	546	23	18	18	39	1.92
1659--1746	2	44.0	2	97	0	167	50	48	0	1	1.08
11617--11684	24	3.0	22	82	10	84	33	10	7	48	1.65
11937--11978	22	1.9	22	85	0	57	66	7	9	16	1.42
23722--23863	72	2.0	73	87	6	209	29	14	16	39	1.88
23722--23892	74	2.3	73	84	9	199	29	13	17	39	1.88
25987--26018	16	2.0	16	93	0	55	21	31	6	40	1.78
31460--31500	21	2.0	21	90	0	64	7	9	24	58	1.55
33688--33788	33	3.1	33	94	1	168	24	30	18	25	1.98
35722--35766	22	2.0	22	95	0	81	33	8	33	24	1.86
36539--36607	34	2.0	34	88	0	102	36	5	27	30	1.80
38758--38811	19	2.6	21	77	19	60	38	3	18	38	1.69
42880--43058	48	3.7	48	95	0	313	49	19	8	22	1.74
44767--44860	45	2.2	43	88	7	138	39	22	4	34	1.74
46038--46080	22	2.0	20	86	8	59	69	0	25	4	1.07
46862--46917	6	9.5	6	79	11	53	83	1	8	5	0.85
48100--48240	35	4.0	35	85	4	178	16	20	21	41	1.90
48989--49532	35	15.5	35	77	4	432	18	20	20	39	1.92
48989--49527	105	5.1	106	83	4	549	18	20	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49009--49537	211	2.5	210	82	3	616	19	20	21	38	1.93
49007--49490	141	3.4	140	74	7	399	17	20	22	39	1.92
49543--50009	50	9.4	50	89	2	735	27	15	19	38	1.91
49543--50091	100	5.6	100	87	6	742	27	15	19	37	1.92
49543--50009	248	1.9	250	93	0	803	27	15	19	38	1.91
49974--50046	37	2.0	36	97	2	137	28	19	16	35	1.93
49919--50151	87	2.6	85	78	9	227	31	15	19	33	1.93
50055--50131	37	2.1	38	90	2	120	38	16	22	22	1.93
50216--50464	42	5.9	42	88	0	354	27	17	28	27	1.97
50457--50631	89	2.0	88	81	3	208	28	17	25	29	1.97
52451--52559	46	2.4	47	84	6	161	38	26	11	23	1.88
53645--53688	18	2.5	18	81	3	54	40	6	6	45	1.57
58366--58416	25	2.0	25	96	0	93	41	9	11	37	1.75
58533--58557	2	12.5	2	100	0	50	52	0	48	0	1.00
59338--59362	13	1.9	13	100	0	50	48	4	0	48	1.20
75759--75786	11	2.5	11	100	0	56	21	0	17	60	1.36
78671--78700	15	1.9	16	93	6	53	30	20	23	26	1.98
86958--86983	2	13.0	2	100	0	52	50	0	0	50	1.00
90752--91079	84	3.9	85	87	4	448	23	9	26	40	1.84
90755--91080	43	7.7	42	77	12	292	23	8	26	41	1.83
93416--93745	43	7.8	43	85	4	438	20	10	26	42	1.84
93416--93745	84	3.9	84	92	1	536	20	10	26	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94693--94717	6	4.2	6	100	0	50	32	20	16	32	1.94
96095--96139	15	2.9	15	83	6	54	33	0	13	53	1.40
97814--98394	290	2.0	289	98	0	1126	44	13	12	29	1.80
101456--101495	18	2.2	18	100	0	80	50	5	17	27	1.67
102510--102542	3	11.0	3	100	0	66	66	0	0	33	0.92
118601--118761	60	2.7	60	92	0	259	36	18	17	27	1.94
118662--118761	31	3.3	31	72	16	109	36	20	19	25	1.95
118633--118734	29	3.5	28	72	15	89	32	17	19	30	1.95
118804--118879	31	2.5	31	84	0	98	28	18	14	38	1.90
120172--120206	4	8.8	4	100	0	70	0	22	0	77	0.78

Tables:   1

The End!