Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016165.1 Corchorus olitorius cultivar O-4 contig16198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67301

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2709--2747
20
2.0
20
89
0
60
56
7
0
35
1.28
2794--2844
21
2.4
21
83
9
59
17
35
29
17
1.93
3270--3608
178
1.9
179
81
5
418
34
12
16
36
1.86
4634--4664
9
3.4
9
95
0
53
12
0
0
87
0.55
14082--14111
15
1.9
16
93
6
53
63
0
10
26
1.26
16566--16696
22
5.9
22
70
13
70
36
8
16
38
1.78
16940--17145
22
9.6
22
71
12
101
41
10
14
33
1.80
16729--17118
22
17.9
22
69
17
190
40
10
16
32
1.82
17245--17371
22
5.7
22
72
8
96
41
8
14
35
1.76
17245--17366
44
2.8
44
82
5
140
40
9
13
36
1.77
17383--17415
8
4.1
8
92
0
57
45
12
0
42
1.41
20004--20072
4
17.2
4
100
0
138
24
0
24
50
1.49
21880--21923
18
2.5
18
85
3
54
27
13
2
56
1.49
30182--30241
6
10.2
6
72
16
54
80
3
15
1
0.93
30172--30213
13
3.2
13
80
13
50
76
2
21
0
0.90
30198--30240
17
2.6
16
85
7
59
79
2
16
2
0.95
30177--30240
11
5.5
12
78
9
53
78
3
17
1
0.96
38643--38678
2
18.0
2
100
0
72
50
0
0
50
1.00
46993--47037
22
2.0
22
86
0
63
22
11
4
62
1.46
46930--47100
93
1.8
93
92
0
288
31
12
3
52
1.57
47214--47469
129
2.0
129
86
6
365
37
9
1
51
1.45
47989--48069
38
2.1
38
97
0
153
9
19
29
40
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51038--51062
12
2.1
12
100
0
50
32
8
16
44
1.76
51304--51342
5
7.8
5
100
0
78
82
0
17
0
0.68
53002--53232
129
1.8
127
83
5
304
59
5
4
29
1.41
53285--53320
13
2.8
13
86
0
54
16
41
8
33
1.78
53322--53391
36
1.9
36
88
5
106
47
5
12
34
1.66
53578--53618
2
20.5
2
94
0
73
51
2
0
46
1.14
55586--55847
129
2.0
129
88
4
393
50
1
9
38
1.47
57310--57357
23
2.0
22
84
11
60
35
2
8
54
1.42
59039--59071
2
16.5
2
100
0
66
48
0
0
51
1.00
59444--59707
107
2.5
105
91
3
415
40
8
9
41
1.68
63044--63098
19
2.9
18
78
10
58
20
16
32
30
1.94
66297--66703
36
11.2
37
80
9
448
46
12
16
24
1.82
66290--66703
72
5.7
72
85
5
566
46
12
16
24
1.82
66297--66688
217
1.8
217
89
2
626
46
11
16
24
1.81

Tables:   1

The End!