Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016168.1 Corchorus olitorius cultivar O-4 contig16201, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2022
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34


Found at i:346 original size:22 final size:22

Alignment explanation


    Indices: 319--363  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        309 ACCGTTATTT

                          *       
        319 CTTCTTCTTCCCTCGACTCAAA
          1 CTTCTTCTTCCCTCCACTCAAA

                       *          
        341 CTTCTTCTTCCTTCCACTCAAA
          1 CTTCTTCTTCCCTCCACTCAAA

             
        363 C
          1 C

        364 CCTAGATCTC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.18, C:0.42, G:0.02, T:0.38


Consensus pattern (22 bp):   
CTTCTTCTTCCCTCCACTCAAA
Done.